View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17978_low_27 (Length: 334)

Name: NF17978_low_27
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17978_low_27
NF17978_low_27
[»] chr6 (13 HSPs)
chr6 (26-94)||(26801439-26801507)
chr6 (34-123)||(27532734-27532823)
chr6 (46-114)||(27367943-27368011)
chr6 (46-114)||(27458290-27458358)
chr6 (46-123)||(27672495-27672572)
chr6 (45-112)||(27334773-27334840)
chr6 (45-112)||(27395513-27395580)
chr6 (45-123)||(27605861-27605939)
chr6 (49-93)||(26847574-26847618)
chr6 (176-212)||(27532871-27532907)
chr6 (247-324)||(27612630-27612710)
chr6 (45-114)||(26855385-26855454)
chr6 (46-106)||(27612398-27612457)
[»] chr4 (2 HSPs)
chr4 (289-334)||(5084303-5084348)
chr4 (68-121)||(5084434-5084487)


Alignment Details
Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 26801507 - 26801439
Alignment:
Q  26 tattagtaacatttttgtattatatttggaatttgactcacctcttgtagatttttcattaagttttaa 94  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  26801507 tattagtaacatttttgtattatatttggagtttgactcacctcttgtagattcttcattaagctttaa 26801439  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 27532734 - 27532823
Alignment:
Q  34 acatttttgtattatatttggaatttgactcacctcttgtagatttttcattaagttttaatgataaataattattgt--tagaacccaatt 123  Q
    |||||||||||||||  ||||| |||||| |||||| || ||||| |||||||||||||||||||||||||||| |||  ||||||||||||    
T  27532734 acatttttgtattat--ttggagtttgacgcacctcctggagattcttcattaagttttaatgataaataattagtgttatagaacccaatt 27532823  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 27367943 - 27368011
Alignment:
Q  46 tatatttggaatttgactcacctcttgtagatttttcattaagttttaatgataaataattattgttag 114  Q
    |||||||||| ||||| | |||| ||||||||| |||||||||||||||||||||||||||| ||||||    
T  27367943 tatatttggagtttgatttaccttttgtagattcttcattaagttttaatgataaataattagtgttag 27368011  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 27458290 - 27458358
Alignment:
Q  46 tatatttggaatttgactcacctcttgtagatttttcattaagttttaatgataaataattattgttag 114  Q
    |||||||||| ||||| | |||| ||||||||| |||||||||||||||||||||||||||| ||||||    
T  27458290 tatatttggagtttgatttaccttttgtagattcttcattaagttttaatgataaataattagtgttag 27458358  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 27672495 - 27672572
Alignment:
Q  46 tatatttggaatttgactcacctcttgtagatttttcattaagttttaatgataaataattattgttagaacccaatt 123  Q
    |||||||||| ||||| | | |||||||||||| |||||||||||||||  ||||||||||| |||||| ||||||||    
T  27672495 tatatttggagtttgatttatctcttgtagattcttcattaagttttaaccataaataattagtgttaggacccaatt 27672572  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 27334773 - 27334840
Alignment:
Q  45 ttatatttggaatttgactcacctcttgtagatttttcattaagttttaatgataaataattattgtt 112  Q
    ||||||||| ||||||| |||||||||||| ||| ||||| |||||| || |||||||||||| ||||    
T  27334773 ttatatttgaaatttgattcacctcttgtaaattcttcataaagtttgaaagataaataattagtgtt 27334840  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 27395513 - 27395580
Alignment:
Q  45 ttatatttggaatttgactcacctcttgtagatttttcattaagttttaatgataaataattattgtt 112  Q
    ||||||||| ||||||| |||||||||||| ||| ||||| |||||| || |||||||||||| ||||    
T  27395513 ttatatttgaaatttgattcacctcttgtaaattcttcataaagtttgaaagataaataattagtgtt 27395580  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 27605861 - 27605939
Alignment:
Q  45 ttatatttggaatttgactcacctcttgtagatttttcattaagttttaatgataaataattattgttagaacccaatt 123  Q
    ||||||||| ||||||| | ||||||| || ||| ||||| |||||||||  ||||||||||| |||| ||||||||||    
T  27605861 ttatatttgaaatttgatttacctcttataaattcttcataaagttttaaaaataaataattagtgttggaacccaatt 27605939  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 26847618 - 26847574
Alignment:
Q  49 atttggaatttgactcacctcttgtagatttttcattaagtttta 93  Q
    ||||||| |||||||||||||||||||||||| ||| ||||||||    
T  26847618 atttggagtttgactcacctcttgtagattttacatcaagtttta 26847574  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 27532871 - 27532907
Alignment:
Q  176 ggttcatccacaaatctctgcttgtgtgaattctcaa 212  Q
    ||||||||||||||||||| |||||||||||||||||    
T  27532871 ggttcatccacaaatctctacttgtgtgaattctcaa 27532907  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 27612630 - 27612710
Alignment:
Q  247 aaaggttgactaataaa-taacacattaagcttgattccaaaa---atatacacatttgtttaggtcttaattttggcatat 324  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||   ||||||||||||| |  ||||| |||||||||||||    
T  27612630 aaaggttgactaataaagtaactcattaagcttg-ttccaaaaaaaatatacacatttgctccggtctaaattttggcatat 27612710  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 26855454 - 26855385
Alignment:
Q  45 ttatatttggaatttgactcacctcttgtagatttttcattaagttttaatgataaataattattgttag 114  Q
    ||||||||| | |||||  || |||||||| ||| ||||| ||||||||| |||||||||||| ||||||    
T  26855454 ttatatttgaagtttgatacatctcttgtaaattcttcataaagttttaaagataaataattagtgttag 26855385  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 27612398 - 27612457
Alignment:
Q  46 tatatttggaatttgactcacctcttgtagatttttcattaagttttaatgataaataatt 106  Q
    |||||||| |||| |||||||||||| ||  ||||| |||||||| |||||||||||||||    
T  27612398 tatatttgaaattagactcacctcttctaagttttt-attaagttctaatgataaataatt 27612457  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 5084348 - 5084303
Alignment:
Q  289 atatacacatttgtttaggtcttaattttggcatatctattacccc 334  Q
    ||||||| ||||||| || |||| ||||||||||||||||||||||    
T  5084348 atatacaaatttgttcagatctttattttggcatatctattacccc 5084303  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 5084487 - 5084434
Alignment:
Q  68 tcttgtagatttttcattaagttttaatgataaataattattgttagaacccaa 121  Q
    ||||| ||| |||||||| |||||||| |||||||||||| |||||| ||||||    
T  5084487 tcttgcagaattttcatttagttttaacgataaataattagtgttagcacccaa 5084434  T

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