View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_29 (Length: 320)
Name: NF17978_low_29
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 27 - 291
Target Start/End: Complemental strand, 1634713 - 1634449
Alignment:
| Q |
27 |
ggagcggtgacggagttgagtagtgggaagatgttcggaggatacaacaagagatacaaacattacagtaacacacttggttgttcaatgaacttccaca |
126 |
Q |
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| T |
1634713 |
ggagcagtgacggagttgagtagtgggaagatgttcggaggatacaacaagagatacaaacattacagtaacacacttggttgttcaatgaacttccaca |
1634614 |
T |
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| Q |
127 |
tttactttcccaattctgattccaacaaatcattcccagttctttattggctctctggtctcacttgtaccgacgagaatttcattttcaaatccggtgc |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1634613 |
tttactttcccaattctgattccaacaaatcattcccagttctttattggctctctggtctcacttgtaccgacgagaatttcattttcaaatccggtgc |
1634514 |
T |
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| Q |
227 |
tcaacgtgccgcttccgaacacggtgttgccttgatcgcccctgacacctctccaagtaattttt |
291 |
Q |
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| T |
1634513 |
tcaacgtgccgcttccgaacacggtgttgccttgatcgcccccgacacctctccaagtaattttt |
1634449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 27 - 285
Target Start/End: Complemental strand, 21069376 - 21069118
Alignment:
| Q |
27 |
ggagcggtgacggagttgagtagtgggaagatgttcggaggatacaacaagagatacaaacattacagtaacacacttggttgttcaatgaacttccaca |
126 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| || | |
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| T |
21069376 |
ggagcagtgacggagttgagtagtgggaagatgtttggaggatacaataagagatacaaacattacagcaacacacttggttgtgaaatgaactttcata |
21069277 |
T |
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| Q |
127 |
tttactttcccaattctgattccaacaaatcattcccagttctttattggctctctggtctcacttgtaccgacgagaatttcattttcaaatccggtgc |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
21069276 |
tttactttcccaattctgattccaacaaatcattcccagttctttattggctctctggtctcacttgcaccgatgagaatttcatcttcaaatccggtgc |
21069177 |
T |
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| Q |
227 |
tcaacgtgccgcttccgaacacggtgttgccttgatcgcccctgacacctctccaagta |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21069176 |
tcaacgtgccgcttccgaacacggtgttgccttgatcgcccctgacacctctccaagta |
21069118 |
T |
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