View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_32 (Length: 294)
Name: NF17978_low_32
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 51276478 - 51276711
Alignment:
| Q |
15 |
aacttattctgaagaagtgcatagtgttgttgagttacttgatttaacatagatcttaaaatctgattctccttcttcacctcttctaccttactttcca |
114 |
Q |
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| T |
51276478 |
aacttattctgaagaagtgcatagtgttgttgagttacttgatttaacatagatcttcaaatctgattctccttcttcacctcttctaccttactttcca |
51276577 |
T |
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| Q |
115 |
gccaccccaactgaattaagtccactcatnnnnnnnnnnnnta--------tattggttcagcatcaattcaaaattaagcacatattataagaaaataa |
206 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51276578 |
gccaccccaactgaattaagtccactcataaaaataaaaaataaaaatattaattggttcagcatcaattcaaaattaagcacatattataagaaaataa |
51276677 |
T |
|
| Q |
207 |
ttgtataactataacctatatcagtttaagctat |
240 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
51276678 |
ttgtataactataacctatatcagtttaagctat |
51276711 |
T |
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