View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17978_low_34 (Length: 283)

Name: NF17978_low_34
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17978_low_34
NF17978_low_34
[»] chr3 (3 HSPs)
chr3 (18-98)||(42773127-42773207)
chr3 (144-263)||(42769779-42769892)
chr3 (213-252)||(42771113-42771152)
[»] chr1 (1 HSPs)
chr1 (220-250)||(19196092-19196122)


Alignment Details
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 42773127 - 42773207
Alignment:
Q  18 ggtaagtcaaccaacttggaaccttaactcttttccaattaacgagttactctagataccgaccaaacatgttactcttct 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42773127 ggtaagtcaaccaacttggaaccttaactcttttccaattaacgagttactctagataccgaccaaacatgttactcttct 42773207  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 263
Target Start/End: Complemental strand, 42769892 - 42769779
Alignment:
Q  144 ggtgctatttctccactattttgctagttatgttaatgatgaaaaaataaaattgttgtnnnnnnnnncaatggtgaactgaataaacaaataaatgtta 243  Q
    ||||| ||||||||||||||||||||||||||||||||||| || ||||||| || |            ||||||||| ||||||||||| |||||||||    
T  42769892 ggtgccatttctccactattttgctagttatgttaatgatgtaataataaaactgat------taataaaatggtgaattgaataaacaagtaaatgtta 42769799  T
Q  244 gagacacaccaaattaataa 263  Q
    ||||||||||| || |||||    
T  42769798 gagacacaccatatcaataa 42769779  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 42771113 - 42771152
Alignment:
Q  213 aatggtgaactgaataaacaaataaatgttagagacacac 252  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  42771113 aatggtgaattgaataaacaaataaatgttagagatacac 42771152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 250
Target Start/End: Original strand, 19196092 - 19196122
Alignment:
Q  220 aactgaataaacaaataaatgttagagacac 250  Q
    |||||||||||||||||||||||||||||||    
T  19196092 aactgaataaacaaataaatgttagagacac 19196122  T

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