View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_37 (Length: 265)
Name: NF17978_low_37
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 38274860 - 38275018
Alignment:
| Q |
1 |
cggttcaaacaaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaataatctgaatcaagtgtatctaatattctcgtca |
100 |
Q |
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| T |
38274860 |
cggttcaaacaaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaataatccgaatcgagtgtatctaatattctcgtca |
38274959 |
T |
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| Q |
101 |
catctcattttgtatacaactagaacaaattacttgcttaaatgataagctaaactaga |
159 |
Q |
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| T |
38274960 |
catcacattttgtatacaactagaacaaatcaccttcttaaatgataagctaaactaga |
38275018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5333114 - 5333021
Alignment:
| Q |
1 |
cggttcaaacaaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaataatctgaatcaagtgtatctaatattc |
94 |
Q |
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| T |
5333114 |
cggttcaaataaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaataatctgaatcgagtgtatctaaaattc |
5333021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 29518943 - 29519035
Alignment:
| Q |
2 |
ggttcaaacaaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaataatctgaatcaagtgtatctaatattc |
94 |
Q |
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| T |
29518943 |
ggttcaaataaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaataatctgaatcgagtgtatctaaaattc |
29519035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 35487291 - 35487356
Alignment:
| Q |
3 |
gttcaaacaaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaata |
68 |
Q |
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| T |
35487291 |
gttcaaacaaattaacacctgaactgaaaactcaatttctcaatcgaatcaatctcatatgtaata |
35487356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 35487352 - 35487397
Alignment:
| Q |
87 |
taatattctcgtcacatctcattttgtatacaactagaacaaatta |
132 |
Q |
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| T |
35487352 |
taatattctcgtcatatctcattttgtatacaactagaacaaatta |
35487397 |
T |
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