View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_38 (Length: 250)
Name: NF17978_low_38
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 53295538 - 53295791
Alignment:
| Q |
1 |
agcttaagtgatacttacctcaatgttttttgaatgagtgatacgtcaatataaagaatagagctaggtatttttatcatgaacgttacgtgactagac- |
99 |
Q |
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| T |
53295538 |
agcttaagtgatacttacctcaatgttttttgaatgagtgatacgtcaatataaagaatagagctaggtatttttatcatgaacattatgtgactagaca |
53295637 |
T |
|
| Q |
100 |
-ttccaagtaattac-----------catgagcatgtgtccaggcttgtgtttttaacttcnnnnnnncaacaaaatcaacgttacatgatctaaaactt |
187 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53295638 |
gttccaagtaattaccatgagctagacatgagcatgtgtccaggcttgtgtttttaacttttttttctcaacaaaatcaacgttacatgatctaaaactt |
53295737 |
T |
|
| Q |
188 |
tttgacatgaaagnnnnnnngtagttgaaaacggtattgttagtagagaataat |
241 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53295738 |
tttgacatgaaagaaaaaaagtagttgaaaacggtattgttagtagagaataat |
53295791 |
T |
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