View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_4 (Length: 620)
Name: NF17978_low_4
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 214 - 601
Target Start/End: Complemental strand, 32790516 - 32790129
Alignment:
| Q |
214 |
atacaatcctagatgcgtcaaattcgagctgaaattgatgctgtatccaaagctaatggcgatcgcatgaggaaaccgaagggcgacaggttatttctta |
313 |
Q |
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| T |
32790516 |
atacaatcctagatgcgtcaaattcgagctgaaattggtgctgtatccaaagctaatggcgatcgcatgaggaaaccgaagggcgacaggttatttctta |
32790417 |
T |
|
| Q |
314 |
tttacctgtttaattttccagtctttttgcacgatgttgatatacatacaagtgttcatgtcagtcgataaactcaaataaatcaatatgaatggttgta |
413 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32790416 |
tttgcctgtttaattttccagtctttttgcacgatgttgatatacatacaagtgttcatgtcagtcgataaactcaaataaatcaatatgaatggttgta |
32790317 |
T |
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| Q |
414 |
actctgttgattgttaaggtaaatcctgattttgttcacggataaagtcgacaaaactttggtaatcaaagtgctgctaaactagcttgtatgatgggtt |
513 |
Q |
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| T |
32790316 |
actctgttgactgttaaggtaaatcctgattttgttcacggataaagtggacaaaactttggtaatcaaagtgctgctaaactagcttgtatgatgggtt |
32790217 |
T |
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| Q |
514 |
atggtggtttagctgcttatctttcagaaaagtctctagttgagcagcttggctggaaatatcaacttattggaaacaggcacgactg |
601 |
Q |
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| T |
32790216 |
atggtggtttagcagcttatctttcagaaaagtctctagttgagcagcttggctggaaatatcaacttattggaaacaggcacgactg |
32790129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 32790717 - 32790584
Alignment:
| Q |
10 |
gaagcaaaggacaaagtatcgcaaaacaacaatgccttcacaaatttatttgaatttgaaaaccaaaaaatggaatacgtgagcccagaaggacttcgct |
109 |
Q |
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| T |
32790717 |
gaagcaaaggacaaagtatcgcaaaacaacattgccttcacaattttttttgaatttgaacaccaaaaaatggaatacgtgagcccagaaggacttcgct |
32790618 |
T |
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| Q |
110 |
tggatggtcgcagtcgcagacccatggaagtaggtactac |
149 |
Q |
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| T |
32790617 |
tggatggtc------gcagacccatggaagtaggtactac |
32790584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 464 - 562
Target Start/End: Complemental strand, 48283315 - 48283217
Alignment:
| Q |
464 |
acaaaactttggtaatcaaagtgctgctaaactagcttgtatgatgggttatggtggtttagctgcttatctttcagaaaagtctctagttgagcagct |
562 |
Q |
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| T |
48283315 |
acaaaaccctggtaaacaaagtgctgccaaccttgcttgtatgacgggttattatggtttagcagcttatctttcagaaaagtctctagttgagcagct |
48283217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 48283734 - 48283665
Alignment:
| Q |
274 |
gatcgcatgaggaaaccgaagggcgacaggttatttcttatttacctgtttaattttccagtctttttgc |
343 |
Q |
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| T |
48283734 |
gatcgcatgaggaaaccaaagggcgacaggttatttcttatttacttgtttaatttcccagtctttttgc |
48283665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 48284308 - 48284253
Alignment:
| Q |
217 |
caatcctagatgcgtcaaattcgagctgaaattgatgctgtatccaaagctaatgg |
272 |
Q |
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|||||||||||||| ||||||||||| || |||| |||||||||||||||| |||| |
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| T |
48284308 |
caatcctagatgcgacaaattcgagcagagattggtgctgtatccaaagctgatgg |
48284253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 560
Target Start/End: Original strand, 50271416 - 50271467
Alignment:
| Q |
509 |
gggttatggtggtttagctgcttatctttcagaaaagtctctagttgagcag |
560 |
Q |
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||||||| ||| ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
50271416 |
gggttatcatggcttagcagcttatctttcggaaaagtctctagttgagcag |
50271467 |
T |
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