View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17978_low_40 (Length: 243)

Name: NF17978_low_40
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17978_low_40
NF17978_low_40
[»] chr8 (3 HSPs)
chr8 (11-226)||(29787177-29787391)
chr8 (20-95)||(42346744-42346819)
chr8 (41-96)||(32331887-32331942)
[»] chr5 (2 HSPs)
chr5 (11-95)||(8232148-8232232)
chr5 (9-96)||(3549168-3549255)
[»] chr1 (3 HSPs)
chr1 (11-96)||(37502274-37502359)
chr1 (12-96)||(33929142-33929226)
chr1 (20-96)||(12975593-12975669)
[»] chr3 (4 HSPs)
chr3 (24-96)||(33293659-33293729)
chr3 (22-96)||(32925298-32925372)
chr3 (11-93)||(20497455-20497537)
chr3 (11-96)||(25110164-25110249)
[»] chr7 (2 HSPs)
chr7 (11-96)||(29371207-29371292)
chr7 (11-57)||(18702679-18702725)
[»] chr4 (1 HSPs)
chr4 (11-95)||(43859747-43859831)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 29787391 - 29787177
Alignment:
Q  11 gaagtgtcaaggcttcatcactatgtgaacctcttggagctcattcaaatgtatttggttaagaagtgaaatattttcattcatcacgagaagtaaactc 110  Q
    |||||||| ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||||||| || ||||||||||    
T  29787391 gaagtgtcgaggcttcatcactatgtaaacctcttgaagctcatttaaatgtatttggttaaggagtgaaatatttccattcatcatgaaaagtaaactc 29787292  T
Q  111 ttgcacggatatacttgcgagaatacgtgctaatcaaaataataataattattcctagactcccgccctacataaatctacagattctcttataatattc 210  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29787291 ttgcacg-atatacttgcgagaataggtgataatcaaaataataataattattcctagactcccgccctacataaatctacatattctcttataatattc 29787193  T
Q  211 cattctcattctcatt 226  Q
    ||||||||||||||||    
T  29787192 cattctcattctcatt 29787177  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 42346819 - 42346744
Alignment:
Q  20 aggcttcatcactatgtgaacctcttggagctcattcaaatgtatttggttaagaagtgaaatattttcattcatc 95  Q
    |||||||| | ||||| | |||||||||||||||||||  |||||||| ||||||||||| |||||| ||||||||    
T  42346819 aggcttcaccgctatgcggacctcttggagctcattcaggtgtatttgtttaagaagtgagatatttccattcatc 42346744  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 32331887 - 32331942
Alignment:
Q  41 ctcttggagctcattcaaatgtatttggttaagaagtgaaatattttcattcatca 96  Q
    ||||||||||| ||||| ||||||||||||||| ||||| |||||| |||||||||    
T  32331887 ctcttggagcttattcagatgtatttggttaaggagtgagatatttccattcatca 32331942  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 8232148 - 8232232
Alignment:
Q  11 gaagtgtcaaggcttcatcactatgtgaacctcttggagctcattcaaatgtatttggttaagaagtgaaatattttcattcatc 95  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  8232148 gaagtatcgaggcttcatcactatgcgaacctcttggagctcattcagatgtatttggttaaggagtgaaatattttcattcatc 8232232  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 3549168 - 3549255
Alignment:
Q  9 aagaagtgtcaaggcttcatcactatgtgaacctcttggagctcattcaaatgtatttggttaagaagtgaaatattttcattcatca 96  Q
    |||||||||| || ||||||||||||| ||||||||| || | |||||  | |||||||| |||||||||  |||||| |||||||||    
T  3549168 aagaagtgtcgagacttcatcactatgcgaacctcttagaacacattcggacgtatttggataagaagtgggatatttccattcatca 3549255  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 37502274 - 37502359
Alignment:
Q  11 gaagtgtcaaggcttcatcactatgtgaacctcttggagctcattcaaatgtatttggttaagaagtgaaatattttcattcatca 96  Q
    |||||||| ||||||||||||||||||||||||||| | || ||||  |||||||||| |||||||||||||||||||||||||||    
T  37502274 gaagtgtcgaggcttcatcactatgtgaacctcttgaaacttattcggatgtatttggataagaagtgaaatattttcattcatca 37502359  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 33929142 - 33929226
Alignment:
Q  12 aagtgtcaaggcttcatcactatgtgaacctcttggagctcattcaaatgtatttggttaagaagtgaaatattttcattcatca 96  Q
    |||| ||||||||||||||| |||  |||||||||||||| ||||| |||||||| |||||| ||||  |||||| |||||||||    
T  33929142 aagtatcaaggcttcatcaccatgcaaacctcttggagcttattcagatgtatttagttaaggagtgggatatttccattcatca 33929226  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 12975669 - 12975593
Alignment:
Q  20 aggcttcatcactatgtgaacctcttggagctcattcaaatgtatttggttaagaagtgaaatattttcattcatca 96  Q
    ||||||||||||||||  || || |||||||| ||||| ||||||||||||||| ||||  |||||| |||||||||    
T  12975669 aggcttcatcactatgcaaatcttttggagcttattcagatgtatttggttaaggagtgggatatttccattcatca 12975593  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 33293659 - 33293729
Alignment:
Q  24 ttcatcactatgtgaacctcttggagctcattcaaatgtatttggttaagaagtgaaatattttcattcatca 96  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||||||||| |||| |||||||||||||||||    
T  33293659 ttcatcactatgcgaacctcttggagctca-tcagatgtatttggttaaggagtg-aatattttcattcatca 33293729  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 32925372 - 32925298
Alignment:
Q  22 gcttcatcactatgtgaacctcttggagctcattcaaatgtatttggttaagaagtgaaatattttcattcatca 96  Q
    |||||||| ||||||||||||||||||| ||||||  |||||| ||||||||  |||  ||||||||||||||||    
T  32925372 gcttcatcgctatgtgaacctcttggagttcattcggatgtatgtggttaaggtgtgtgatattttcattcatca 32925298  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 20497455 - 20497537
Alignment:
Q  11 gaagtgtcaaggcttcatcactatgtgaacctcttggagctcattcaaatgtatttggttaagaagtgaaatattttcattca 93  Q
    |||||||| ||  |||||||| |||  |||||||||||||||||||  |||||||||| |||| |||||  ||||| ||||||    
T  20497455 gaagtgtcgagatttcatcaccatgcaaacctcttggagctcattcggatgtatttggataaggagtgatttatttccattca 20497537  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 25110164 - 25110249
Alignment:
Q  11 gaagtgtcaaggcttcatcactatgtgaacctcttggagctcattcaaatgtatttggttaagaagtgaaatattttcattcatca 96  Q
    |||||||| || ||||||  |||||||||||||||| |  |||||   |||||||||| |||| ||||| ||||||||||| ||||    
T  25110164 gaagtgtcgagacttcattgctatgtgaacctcttgaaattcattaggatgtatttggataaggagtgagatattttcatttatca 25110249  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 29371207 - 29371292
Alignment:
Q  11 gaagtgtcaaggcttcatcactatgtgaacctcttggagctcattcaaatgtatttggttaagaagtgaaatattttcattcatca 96  Q
    |||||||| || ||| |||||||||  |||  |||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  29371207 gaagtgtcgagactttatcactatgcaaacaacttgaagctcattcaaatgtattttgttaaggagtgagatattttcattcatca 29371292  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 18702725 - 18702679
Alignment:
Q  11 gaagtgtcaaggcttcatcactatgtgaacctcttggagctcattca 57  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||    
T  18702725 gaagtgtcaaggcttcatcactatgcaaacctcttggagctcattca 18702679  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 43859831 - 43859747
Alignment:
Q  11 gaagtgtcaaggcttcatcactatgtgaacctcttggagctcattcaaatgtatttggttaagaagtgaaatattttcattcatc 95  Q
    |||||||| || ||||| | |||||  ||| ||||||||||||||||  |||||||||||||  ||||| |||||| ||||||||    
T  43859831 gaagtgtcgagacttcaccgctatgcaaacatcttggagctcattcaggtgtatttggttaaagagtgagatatttccattcatc 43859747  T

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