View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_43 (Length: 237)
Name: NF17978_low_43
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 5546542 - 5546465
Alignment:
| Q |
147 |
agattagatatctgatgatattccaaattggtgcaagcaaactaatcgtcgcgtatgatacttgacccctcatttctg |
224 |
Q |
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| T |
5546542 |
agattagatatctgatgatattccaaattggtgcaagcaaactaatcgtcgcgtatgatacttgacccctcatttctg |
5546465 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 5546645 - 5546604
Alignment:
| Q |
43 |
attaaacaagatatagagtgaccactagtagtagtacctatcatt |
87 |
Q |
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| T |
5546645 |
attaaacaagatatagagtgacc---agtagtagtacctatcatt |
5546604 |
T |
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