View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_48 (Length: 210)
Name: NF17978_low_48
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 52 - 195
Target Start/End: Original strand, 32377056 - 32377199
Alignment:
| Q |
52 |
aatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataattcctccttgttgatctttagatacaaatgcgtattttt |
151 |
Q |
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| T |
32377056 |
aatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataattcctccttgttgatctttagatacaaatgcgtattttt |
32377155 |
T |
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| Q |
152 |
tctcaaagggtttgtctctaacttgaacctgtgattcttcatct |
195 |
Q |
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| T |
32377156 |
tctcgaagggtttgtctctaacttgaacctgtgattcttcatct |
32377199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 52 - 195
Target Start/End: Original strand, 32365371 - 32365514
Alignment:
| Q |
52 |
aatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataattcctccttgttgatctttagatacaaatgcgtattttt |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |
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| T |
32365371 |
aatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataatacctccttgttgatctttagatgcaaatgcatattttt |
32365470 |
T |
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| Q |
152 |
tctcaaagggtttgtctctaacttgaacctgtgattcttcatct |
195 |
Q |
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| T |
32365471 |
tctcgaatggtttctctctaacttgaacctgtgattcttcatct |
32365514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 36122003 - 36122044
Alignment:
| Q |
66 |
ccaaatgtcaagtattcctccactccatttcggtctattttc |
107 |
Q |
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| T |
36122003 |
ccaaatgtcaagtattccaccactccactttggtctattttc |
36122044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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