View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17978_low_5 (Length: 603)
Name: NF17978_low_5
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 25350539 - 25350808
Alignment:
| Q |
1 |
atcagatgcattagtttgcaatgcatttcttagttcttcgttttgtcgatcttgttcttcaatccaacgtccatattcaatttcaaacaaagatatccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25350539 |
atcagatgcattagtttgcaatgcatttcttagttcttcgttttgtcgatcttgttcttcaatccaacgtccatattcaatttcaaacaaagatatccct |
25350638 |
T |
|
| Q |
101 |
gcttcatacaataataaaggctaatttaagaaagccacaacacaacacacaaaatcaaatgatccttcatccatatataaacttgaaataagtataagta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25350639 |
gcttcatacaataataaaggctaatttaagaaagccacaacacaacacacaaaatcaaatgatccttcatccatatataaacttgaaataagtataagta |
25350738 |
T |
|
| Q |
201 |
attacaaattaatggtatctcataatataacaaagataaaattagttcaaaccagttgagctacccaaca |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25350739 |
attacaaattaatggtatctcataatataacaaagataaaattagtttaaaccagttgagctacccaaca |
25350808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 352 - 586
Target Start/End: Original strand, 25350890 - 25351124
Alignment:
| Q |
352 |
ccattcagtttctgcaattgcatctaaaaaacaataagcaagtgataactaagaaagtgtcattttgagaaagcttaaaacaacaaatatgaatcactag |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25350890 |
ccattcagtttctgcaattgcatctaaaaaacaataagcaagtgataactaagaaaatgtcattttgagaaagcttaaaacaacaaatatgaattactag |
25350989 |
T |
|
| Q |
452 |
cctgagtttattgttctggatgatcccatattactgacactgacttcaaataaattgcttccctataaaccctgcatgcagaaatttttatatatgctta |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25350990 |
cctgagtttattgttctggatgatcccatattactgacactgacttcaaataaattgcttccctataaaccctgcatgcagaaatttttatatatgctta |
25351089 |
T |
|
| Q |
552 |
gaaaggatagataaaataatactatacattaaatt |
586 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25351090 |
gaaaggatagagaaaataatactatacattaaatt |
25351124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 25355957 - 25356061
Alignment:
| Q |
1 |
atcagatgcattagtttgcaatgcatttcttagttcttcgttttgtcgatcttgttcttcaatccaacgtccatattcaatttcaaacaaagatatccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25355957 |
atcagatgcattagtttgcaatgcatttcttagttcctcgttttgtcgatcttgttcttcaatccaacgtccatattcaatttcaaacaatgatatccct |
25356056 |
T |
|
| Q |
101 |
gcttc |
105 |
Q |
| |
|
||||| |
|
|
| T |
25356057 |
gcttc |
25356061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 25348346 - 25348448
Alignment:
| Q |
1 |
atcagatgcattagtttgcaatgcatttcttagttcttcgttttgtcgatcttgttcttcaatccaacgtccatattcaatttcaaacaaagatatccct |
100 |
Q |
| |
|
||||||||||||| | ||||| |||||||||||||||| |||||||| |||||| ||||||||||| ||||||||||| |||||||| ||||| || ||| |
|
|
| T |
25348346 |
atcagatgcattattatgcaaagcatttcttagttctttgttttgtctatcttgctcttcaatccagcgtccatattcgatttcaaataaagagatacct |
25348445 |
T |
|
| Q |
101 |
gct |
103 |
Q |
| |
|
||| |
|
|
| T |
25348446 |
gct |
25348448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 482
Target Start/End: Original strand, 25356091 - 25356162
Alignment:
| Q |
411 |
tcattttgagaaagcttaaaacaacaaatatgaatcactagcctgagtttattgttctggatgatcccatat |
482 |
Q |
| |
|
|||||||||| || |||||||| |||| || ||||||||| |||||||||||||||| ||| |||||||||| |
|
|
| T |
25356091 |
tcattttgaggaaacttaaaactacaattacgaatcactaacctgagtttattgttccggacgatcccatat |
25356162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University