View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_6 (Length: 598)
Name: NF17978_low_6
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 9 - 583
Target Start/End: Original strand, 33277436 - 33278012
Alignment:
| Q |
9 |
agcagagatgccaacaactggacctacttgaaattcccactacatataacaatcaaattaaattaaaaatgtaacataaaatgtgaatgtcaaaattgtg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33277436 |
agcagagatgccaacaactggacctacttgaaattcccactacatataccaatcaaattaaattaaaaatgtaacataaattgtgaatgtcaaaattgtg |
33277535 |
T |
|
| Q |
109 |
gaacatcaaatgtttaaacttacatacctggctaggcataacttctccattaacaccactgatgttaatgccagcataaaggcatgctttgtaatgtgca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33277536 |
gaacatcaaatgtttaaacttacatacctggctaggcataacttctccattaacaccactgatgttaatgccagcataaaggcatgctttgtaatgtgca |
33277635 |
T |
|
| Q |
209 |
tcaacaatatcacgccctaatgccttttcagcaccaacaccacaatagtatggtccctattcagcaaacaaaaagagtaaatctctagggttgaaacccg |
308 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33277636 |
tcaacaatatcacgccctaatgccttttcagcaccaacaccacaatagtatggtccctattcagcaaacaaaaagagtaaatctttagggttgaaacccg |
33277735 |
T |
|
| Q |
309 |
gaattccacacttctacacacttagtgtgtgattctctccaccaaactatttgatnnnnnnngaacggaacaccaaacaagtgtaaaagagttttcacct |
408 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
33277736 |
gaattccacaattctacacacttagtgtgtgattctctccaccaaactatttgacaaaaaaagaatggaacaccaaacaagtgtaaaagagttttcacct |
33277835 |
T |
|
| Q |
409 |
gaggtccaggaaaaccgcccttaggccatccaagaggccagtgtacatctttctgcaacaaggtgtattcttgctcaattccatacctatatggagatca |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
33277836 |
gaggtccaggaaaaccgcccttaggccatccaagaggccagtgtgcatctttctgcaacaaggtgtattcttgctcaataccatacctgtatggagatca |
33277935 |
T |
|
| Q |
509 |
tacaccaatatttagtaaatgataagattgaattaatcatgc--nnnnnnntctctaaaaatggaaatgagagtagt |
583 |
Q |
| |
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||||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
33277936 |
tacaccaatctatagtaaacgataagattgaattaatcatgcaaaaacaaatctctaaaaatggaaatgagagtagt |
33278012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 142 - 276
Target Start/End: Original strand, 29442092 - 29442226
Alignment:
| Q |
142 |
aggcataacttctccattaacaccactgatgttaatgccagcataaaggcatgctttgtaatgtgcatcaacaatatcacgccctaatgccttttcagca |
241 |
Q |
| |
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|||||| ||||| ||||| | ||||||||||| ||||| |||||||| || ||||||||||||| |||||||| ||||| || |||||||| |||||| |
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| T |
29442092 |
aggcatcacttcaccattgattccactgatgttgatgccggcataaagacaggctttgtaatgtgagtcaacaatgtcacggccaaatgccttgtcagca |
29442191 |
T |
|
| Q |
242 |
ccaacaccacaatagtatggtccctattcagcaaa |
276 |
Q |
| |
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||| |||||||||||||||||||||||| |||||| |
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|
| T |
29442192 |
ccagcaccacaatagtatggtccctattgagcaaa |
29442226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 397 - 497
Target Start/End: Original strand, 29442453 - 29442553
Alignment:
| Q |
397 |
gagttttcacctgaggtccaggaaaaccgcccttaggccatccaagaggccagtgtacatctttctgcaacaaggtgtattcttgctcaattccatacct |
496 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| ||||||||||||| | |||||||||||||||||||||||||| ||||| |||||||| |
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| T |
29442453 |
gagttttcacctgaggtccaggaaaaccaccaactggccaaccaagaggccagttgatgtctttctgcaacaaggtgtattcttgttcaataccatacct |
29442552 |
T |
|
| Q |
497 |
a |
497 |
Q |
| |
|
| |
|
|
| T |
29442553 |
a |
29442553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 132 - 266
Target Start/End: Original strand, 26249200 - 26249334
Alignment:
| Q |
132 |
atacctggctaggcataacttctccattaacaccactgatgttaatgccagcataaaggcatgctttgtaatgtgcatcaacaatatcacgccctaatgc |
231 |
Q |
| |
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||||||| | ||||||||| |||||||| | ||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||| || | || |
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| T |
26249200 |
atacctgaccaggcataacctctccattgatgccactaatgttaatgccagcataaagacaagctttgtaatgtgcatcaacaatgtcacgaccataggc |
26249299 |
T |
|
| Q |
232 |
cttttcagcaccaacaccacaatagtatggtccct |
266 |
Q |
| |
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|| |||||||||| |||||||| ||||| |||| |
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| T |
26249300 |
tttatcagcaccaatcccacaataatatgggccct |
26249334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 496
Target Start/End: Original strand, 26249732 - 26249773
Alignment:
| Q |
455 |
atctttctgcaacaaggtgtattcttgctcaattccatacct |
496 |
Q |
| |
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|||||||||||| || || ||||||||||||||||||||||| |
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| T |
26249732 |
atctttctgcaataatgtatattcttgctcaattccatacct |
26249773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 7192763 - 7192841
Alignment:
| Q |
133 |
tacctggctaggcataacttctccattaacaccactgatgttaatgccagcataaaggcatgctttgtaatgtgcatca |
211 |
Q |
| |
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|||||||| ||||||||| ||| ||||| ||||||||||||||| |||||||| | || || |||||||| |||||| |
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| T |
7192763 |
tacctggccaggcataacctctgcattagtaccactgatgttaattccagcatataaacaagccttgtaatgagcatca |
7192841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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