View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_8 (Length: 531)
Name: NF17978_low_8
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 38605742 - 38605236
Alignment:
| Q |
18 |
cttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgctgctgc---actccaaagatgataatcttcact |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
38605742 |
cttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgctgctgctgcactccaaagatgataatcgtcact |
38605643 |
T |
|
| Q |
115 |
cttcttctcaaggttacacttacacttaccttcctccttgtccagatgatgtcactgcatctgaagatttccggatagtaatgacatttcttagtggtac |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38605642 |
cttcttctcaaggctacacttacacttaccttcctccttgtccagacgatgtcactgcatctgaagatttccggatagtgatgacatttcttagtggtac |
38605543 |
T |
|
| Q |
215 |
tcctcctcctctccataattattattacaaatttaatagatgtttcagtttcacatgcttggaaactctg-------catcagcatcaaccacattttct |
307 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38605542 |
tcct---cctctccataattataattacaaatttaatagatgtttcagtttcacatgcttggaaactctgcatcagccatcagcatcaaccacattttct |
38605446 |
T |
|
| Q |
308 |
actcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggcttttaggagt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38605445 |
actcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcatattcttattcactttatcaagtgggcttttaggagt |
38605346 |
T |
|
| Q |
408 |
aattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatgcgatgttccaactaaatttgatgttgaactaaggcagaatgacatac |
507 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38605345 |
aattcacatctcatcactacccctgttttggaatctcttgtttcagcaatatgcgatgttccaactaaatttgatgttgaactaaggcagaatgacatac |
38605246 |
T |
|
| Q |
508 |
tttttctgtg |
517 |
Q |
| |
|
|||||||||| |
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|
| T |
38605245 |
tttttctgtg |
38605236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 448
Target Start/End: Complemental strand, 40180884 - 40180851
Alignment:
| Q |
415 |
atctcatcactacccctgttttggaatcccttgt |
448 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |
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| T |
40180884 |
atctcatcactacccctgttctggaatcccttgt |
40180851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 300 - 460
Target Start/End: Original strand, 44459952 - 44460121
Alignment:
| Q |
300 |
cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggctt |
399 |
Q |
| |
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|||||| |||||||| ||||||||||||||| ||||||| | | ||||||||||||||||||| |||||||||||||| |||||||| |||||||||| |
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| T |
44459952 |
cattttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggctt |
44460051 |
T |
|
| Q |
400 |
---ttaggag------taattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatg |
460 |
Q |
| |
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| ||||| | || | |||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
44460052 |
ggatgaggaggaacacttatcaagatctcatcactacccctgttctggaatcccttgtttcagaaatatg |
44460121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 300 - 460
Target Start/End: Original strand, 44467485 - 44467654
Alignment:
| Q |
300 |
cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggctt |
399 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||||| | | ||||||||||||||||||| |||||||||||||| |||||||| |||||||||| |
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| T |
44467485 |
cattttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggctt |
44467584 |
T |
|
| Q |
400 |
---ttaggag------taattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatg |
460 |
Q |
| |
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| ||||| | || | |||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
44467585 |
ggatgaggaggaacacttatcaagatctcatcactacccctgttctggaatcccttgtttcagaaatatg |
44467654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 460
Target Start/End: Complemental strand, 34502698 - 34502528
Alignment:
| Q |
300 |
cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcac-tttatcaagtgggct |
398 |
Q |
| |
|
|||||| |||||||| |||||||| |||| | |||||||| | | |||||||||||||||||| |||||||||||||| ||| ||||| ||||||||| |
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| T |
34502698 |
cattttgtactcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttatccacttttatgaagtgggct |
34502599 |
T |
|
| Q |
399 |
tttaggag---------taattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatg |
460 |
Q |
| |
|
| ||||| | || ||||||||| ||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
34502598 |
tggaggaggaggaacacttataaacatctcattactacccttgttctggaatcccttgtttcagcaatatg |
34502528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 461
Target Start/End: Original strand, 44459275 - 44459420
Alignment:
| Q |
316 |
ttattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggcttttaggagtaattcaca |
415 |
Q |
| |
|
||||||||||||| |||||||||| | |||||| ||||||||||| |||||||||||||| ||||||| |||| || || | || ||| | |
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| T |
44459275 |
ttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaagga |
44459374 |
T |
|
| Q |
416 |
tctcatcactacccctgttttggaatcccttgtttcagcaatatgc |
461 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
44459375 |
cctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44459420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 461
Target Start/End: Original strand, 44466808 - 44466953
Alignment:
| Q |
316 |
ttattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggcttttaggagtaattcaca |
415 |
Q |
| |
|
||||||||||||| |||||||||| | |||||| ||||||||||| |||||||||||||| ||||||| |||| || || | || ||| | |
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| T |
44466808 |
ttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaagga |
44466907 |
T |
|
| Q |
416 |
tctcatcactacccctgttttggaatcccttgtttcagcaatatgc |
461 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
44466908 |
cctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44466953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 44460364 - 44460430
Alignment:
| Q |
19 |
ttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct |
85 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||||||| ||||||| |||||||| ||||||| |
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|
| T |
44460364 |
ttttgaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct |
44460430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 44467897 - 44467963
Alignment:
| Q |
19 |
ttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct |
85 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||||||| ||||||| |||||||| ||||||| |
|
|
| T |
44467897 |
ttttgaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct |
44467963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 461
Target Start/End: Original strand, 46358821 - 46358991
Alignment:
| Q |
291 |
catcaaccacattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatca |
390 |
Q |
| |
|
||||||| ||| ||| ||| ||| ||||||||||||| |||||||||| | |||||| ||||||||||| |||||||||||||| ||||||| | |
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|
| T |
46358821 |
catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa |
46358920 |
T |
|
| Q |
391 |
agtgggcttttaggagtaattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatgc |
461 |
Q |
| |
|
||| || || | || ||| | |||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
46358921 |
agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcagaaatatgc |
46358991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 46359234 - 46359300
Alignment:
| Q |
19 |
ttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct |
85 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||||||| ||||||| |||||||| ||||||| |
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|
| T |
46359234 |
ttttgaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct |
46359300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 461
Target Start/End: Original strand, 410692 - 410732
Alignment:
| Q |
421 |
tcactacccctgttttggaatcccttgtttcagcaatatgc |
461 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||||||||||| |
|
|
| T |
410692 |
tcactacccctgttctggagtcccttatttcagcaatatgc |
410732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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