View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_9 (Length: 511)
Name: NF17978_low_9
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 36569973 - 36569478
Alignment:
| Q |
1 |
aactataagacactattgggtcggcgtgcttggccagcggcaactacgcaccgcgaaagttattagtcattagctgaaagtttagggataatactagaat |
100 |
Q |
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| T |
36569973 |
aactataagacactattgggtcggcgtgcttggccagcggcaactacgcaccgcgaaagttattagtcattagctgaaagtttagggataatactagaat |
36569874 |
T |
|
| Q |
101 |
ttggattaaaaaattgcatccgttgctatatttcattgtgcttttccccttcctgcctcaaatgtcattaatttagggtaaggatcattaaatcttaaat |
200 |
Q |
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| T |
36569873 |
ttggattaaaaaattgcatccgttgctatatttcattgtgcttttccccttcctgcctcaaatgtcattaatttagggtaaggatcattaaatcttaaat |
36569774 |
T |
|
| Q |
201 |
agggtaaggttattcaacgcagtacgttatatgatcttgtgctgccttgtgactaagtgaactatattaaaattgttaggcattcatactgattttggat |
300 |
Q |
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| T |
36569773 |
agggtaaggttattcaacgcagtacgttatatgatcttgtgctgccttgtgactaagtgaactatattaaaattgttaggcattcatactgattttggat |
36569674 |
T |
|
| Q |
301 |
atttagtatacatttgatttgacagatcaaaagcaagtatgaattgttttagcttccgtttactccgtgtttcaacattctatctatgatctatttgttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36569673 |
atttagtatacatttgatttgacagatcaaaagcaagtatgaattgttttagcttccgtttactccgtgtttcaacattctatctatgatctatttgttt |
36569574 |
T |
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| Q |
401 |
taagctggatctaatcaagggttagaaaaaacttgtatatttcaagaattataatctcaagtctcaacagttgagatgtgatctaaataacatttt |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36569573 |
taagctggatctaatcaagggttagaaaaaacttgtatatttcaagaattataatctcaagtctcaacagttgagatgtgatctaaataacatttt |
36569478 |
T |
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