View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17979_high_4 (Length: 220)
Name: NF17979_high_4
Description: NF17979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17979_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 4517454 - 4517639
Alignment:
| Q |
19 |
tgaacatgcactagctgaactaaatagaacactaggtaaaccatgttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaacta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4517454 |
tgaacatgcactagctgaactaaatagaacactaggtaaaccatgttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaacta |
4517553 |
T |
|
| Q |
119 |
acaggaggaatatgaccatcattggaagaatctttaagtctagcaagaagttcacagaaggggtgatagaaattctttcttattga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4517554 |
acaggaggaatatgaccatcattggaagaatctttaagtctagcaagaagttcacagaaggggtgatagaaattctttcttattga |
4517639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 4569264 - 4569373
Alignment:
| Q |
96 |
caatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatc-tttaagtctagcaagaagttcacagaaggggtgatagaaattct |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
4569264 |
caatatcagaaactaagcaactaacaggaggaataagatcatcattggaagaatcttttaagtttagcaagaagttcacaaaaagggtgatagaaattct |
4569363 |
T |
|
| Q |
195 |
ttcttattga |
204 |
Q |
| |
|
|||||||||| |
|
|
| T |
4569364 |
ttcttattga |
4569373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 4623506 - 4623606
Alignment:
| Q |
104 |
gaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtctagcaagaagttcacagaaggggtgatagaaattctttcttattg |
203 |
Q |
| |
|
|||||||||||| |||| || |||| | ||||| || ||| ||| || | |||| | |||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
4623506 |
gaaactaagcaagtaactggtggaacaagaccagcagtggcagagtcatgaagttttgcaagaagttcacaaaagggatgatagaaattcttccttattg |
4623605 |
T |
|
| Q |
204 |
a |
204 |
Q |
| |
|
| |
|
|
| T |
4623606 |
a |
4623606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 174
Target Start/End: Original strand, 4581172 - 4581283
Alignment:
| Q |
63 |
gttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtctagc |
162 |
Q |
| |
|
||||||||||||||||||| |||||| || | | |||||||||||| |||| |||| ||||| | | ||||| | ||| ||| || ||||||||||| |
|
|
| T |
4581172 |
gttcttcagcagcttgtattgtaaaatacatgctattatcagaaactatgcaagtaactggagggacaagaccagaagtggcagagtcattaagtctagc |
4581271 |
T |
|
| Q |
163 |
aagaagttcaca |
174 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4581272 |
aagaagttcaca |
4581283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 4572124 - 4572181
Alignment:
| Q |
63 |
gttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaac |
120 |
Q |
| |
|
||||||||||||||||||||||||| | || | |||||||||||||| ||||||||| |
|
|
| T |
4572124 |
gttcttcagcagcttgtatagtaaaggacatgctaatatcagaaactatgcaactaac |
4572181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 4558283 - 4558346
Alignment:
| Q |
63 |
gttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggagg |
126 |
Q |
| |
|
||||||||| ||||||||| ||||||| || |||||||||||||||| |||| |||| ||||| |
|
|
| T |
4558283 |
gttcttcagaagcttgtatggtaaaagacatgccaatatcagaaactatgcaagtaactggagg |
4558346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 4298471 - 4298326
Alignment:
| Q |
60 |
catgttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtct |
159 |
Q |
| |
|
|||||||||| ||||||||||| ||||| | || | || ||||| |||||||||| |||| || || | | ||||| || ||| |||||| |||| | |
|
|
| T |
4298471 |
catgttcttccgcagcttgtatggtaaatgacattaaaaaatcagcaactaagcaagtaactggtggtacaagaccagcagtggcagaatcacgaagttt |
4298372 |
T |
|
| Q |
160 |
agcaagaagttcacagaaggggtgatagaaattctttcttattgat |
205 |
Q |
| |
|
|||||||||||||| ||||| ||| ||| |||||||| |||||| |
|
|
| T |
4298371 |
agcaagaagttcaccaaagggctgaaggaagttctttctgattgat |
4298326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 16685264 - 16685201
Alignment:
| Q |
63 |
gttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggagg |
126 |
Q |
| |
|
||||||||||||||||||||||||||| || | |||||||||||||| |||| |||| ||||| |
|
|
| T |
16685264 |
gttcttcagcagcttgtatagtaaaagacatgctaatatcagaaactatgcaagtaactggagg |
16685201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 20862738 - 20862664
Alignment:
| Q |
99 |
tatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtctagcaagaagttcac |
173 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| |||||||| || | |||| | ||||||||||||| |
|
|
| T |
20862738 |
tatcagaaactaagcaagtaacaggaggtataagaccagatttggaagagtcatgaagtttggcaagaagttcac |
20862664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University