View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17979_low_2 (Length: 460)
Name: NF17979_low_2
Description: NF17979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17979_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 20 - 452
Target Start/End: Original strand, 49115082 - 49115516
Alignment:
| Q |
20 |
acagccacaccagtcataaaagagtcccacataaaataactctgttaacaat--atcattttttaatatcagatcttttatactccatcaaacatgatac |
117 |
Q |
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| T |
49115082 |
acagccacaccagtcataaaagagtcccacataaaataactctgttaacaatgaatcattttttaatatcagatcttttatactccatcaaacatgaaac |
49115181 |
T |
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| Q |
118 |
atgtaaatttacgtgtttcatgtttgatgcatatgtaataagtaacacagtataatgacattataaactcattaagagagattactgaatagaattcgtt |
217 |
Q |
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| T |
49115182 |
acgtaaatttacgtgtttcatgtttgatgcatatgtaataagtaacacagtataatgacattataaactcattaagagagattaccgaatagaattcgtt |
49115281 |
T |
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| Q |
218 |
gtcgaaccaagtatcacgagatattttcaaggatttgaaacagtattgtgcttcatgtgtgtcttgactcttttcaaatgcatcaaagaattgtgcagtg |
317 |
Q |
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| T |
49115282 |
gtcgaaccaagtatcacgagatattttcaaggatttgaaacagtattgtgcttcatgtgtgtcttgactcttttcaaatgcatcaaagaattgtgcagtg |
49115381 |
T |
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| Q |
318 |
atggggattgtgtttgatgcatcaagaggaactagggtgactggaattccagaatgaatcacctatataaaacaatatatactttttgtcacaaacatag |
417 |
Q |
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| T |
49115382 |
atggggattgtgtttgatgcatcaagaggaactagggtgactggaattccagaatgaatcacctatataaaacaatatatactttttgtcacaaacatag |
49115481 |
T |
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| Q |
418 |
ctatccatgtatgtttctgttagatacagtataat |
452 |
Q |
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| T |
49115482 |
ctatccatgtatgtttctgttagatacagtgtaat |
49115516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 179 - 419
Target Start/End: Original strand, 49103185 - 49103428
Alignment:
| Q |
179 |
tataaactcattaagagagattactgaatagaattcgttgtcgaaccaagtatcacgagatattttcaaggatttgaaacagtattgtgcttcatgtgtg |
278 |
Q |
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| T |
49103185 |
tataaattaattaagagatattaccgaatagaattcatcatcaaaccaagtatcacgagttattttcaaggatttgaaacaatattgtgtctcatatgtg |
49103284 |
T |
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| Q |
279 |
tcttgactcttttcaaatgcatcaaagaattgtgcagtgatggggattgtgtttgatgcatcaagaggaactagggtgactggaattccagaatgaatca |
378 |
Q |
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| T |
49103285 |
tcttgactcttttcaaatgcttcaaagaattccttagtgatagggattgtgtttgatgcatcaataggaacaagggtgataggaagtccagaatgaatca |
49103384 |
T |
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| Q |
379 |
cct--atataaaacaatatatacttttt-gtcacaaacatagct |
419 |
Q |
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| T |
49103385 |
cctacatataaaacgatgtttactttttggtcacaaacatagct |
49103428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 49115210 - 49115167
Alignment:
| Q |
103 |
catcaaacatgatacatgtaaatttacgtgtttcatgtttgatg |
146 |
Q |
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| T |
49115210 |
catcaaacatgaaacacgtaaatttacgtgtttcatgtttgatg |
49115167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 216 - 382
Target Start/End: Complemental strand, 6956816 - 6956650
Alignment:
| Q |
216 |
ttgtcgaaccaagtatcacgagatattttcaaggatttgaaacagtattgtgcttcatgtgtgtcttgactcttttcaaatgcatcaaagaattgtgcag |
315 |
Q |
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| T |
6956816 |
ttgtcaaaccaagtatcatgagccattttcaaggacttgaaacagtattgtgcctcgtatgtgtcttgactcttttcaaattcatcaaagaattcttcac |
6956717 |
T |
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| Q |
316 |
tgatggggattgtgtttgatgcatcaagaggaactagggtgactggaattccagaatgaatcaccta |
382 |
Q |
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| T |
6956716 |
ttatggggattgtgtttgttgcatcaagaggaacaagggtaataggaataccagaatgaatcaccta |
6956650 |
T |
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