View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1797_low_1 (Length: 562)
Name: NF1797_low_1
Description: NF1797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1797_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 366
Target Start/End: Original strand, 2251545 - 2251896
Alignment:
| Q |
15 |
agcagagaacggaaagatggatggagaaatagaatcaaacaaggggtaaccgaccacgtgattggagccaaaaaccaatgttttatgtgacttggtcttt |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2251545 |
agcaaagaacggaaagatggatggagaaatagaatcaaacaaggggtaactgaccacgtgattggagccaaaaaccaatgttttatgtgacttggtcttt |
2251644 |
T |
|
| Q |
115 |
tctatttctattgtgtttcacaagcttcaaaattaggaataaaatacttttcatatataaaccaaacaaccctcaaaatgcttaaaccaaacnnnnnnnn |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2251645 |
tctatttctattgtgtttcacaagcttcaaaattaggaataaaatacttttcatatataaaccaaacaaccctcaaaatgcttaaaccaaacaaaaaaaa |
2251744 |
T |
|
| Q |
215 |
nnnnnnntactcttcgtctcggtttggttcgatttaaaaagaaaacatcaacaattaaaaataattgttttgattcaatttttgtaattatcttatgaga |
314 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2251745 |
ttaaaaatactcttcgtctcggtttggtttgatttaaaaagaaaacatcaacaattaaaaataattgttttgattcgatttttgtaattatcttatgaga |
2251844 |
T |
|
| Q |
315 |
tttaaattaaatcaatgaaaaataggttgatttgttttggttcaaacatatg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2251845 |
tttaaattaaatcaatgaaaaataggttgatttgttttggttcaaacatatg |
2251896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 430 - 521
Target Start/End: Original strand, 2251960 - 2252051
Alignment:
| Q |
430 |
ggataataaacttggaaggatgaatcatatactgtataaggataatttcgggtctgttaaatttaattatacggtataaaataccacatttg |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2251960 |
ggataataaacttggaaggatgaatcatatactctataaggataatttcgggtctgttaaatttaattatacggtataaaataccacatttg |
2252051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University