View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1797_low_2 (Length: 312)

Name: NF1797_low_2
Description: NF1797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1797_low_2
NF1797_low_2
[»] chr2 (2 HSPs)
chr2 (16-108)||(27147235-27147327)
chr2 (189-224)||(27147120-27147155)
[»] chr5 (2 HSPs)
chr5 (23-108)||(9383148-9383233)
chr5 (189-224)||(9383304-9383339)
[»] chr1 (1 HSPs)
chr1 (22-108)||(44301835-44301921)
[»] chr7 (2 HSPs)
chr7 (22-105)||(15484081-15484164)
chr7 (185-224)||(15483958-15483997)
[»] chr3 (2 HSPs)
chr3 (22-105)||(30731652-30731735)
chr3 (185-224)||(30731819-30731858)


Alignment Details
Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 27147327 - 27147235
Alignment:
Q  16 cacctcctttcctcctgaattttctctctagagatagattagggatgccatttactagatttcatatgtcttgattgtttccatccctcctga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27147327 cacctcctttcctcctgaattttctctctagagatagattagggatgccatttactagatttcatatgtcttgattgtttccctccctcctga 27147235  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 27147155 - 27147120
Alignment:
Q  189 catctcctgacttttatattgaatttctagctttat 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  27147155 catctcctgacttttatattgaatttctagctttat 27147120  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 9383148 - 9383233
Alignment:
Q  23 tttcctcctgaattttctctctagagatagattagggatgccatttactagatttcatatgtcttgattgtttccatccctcctga 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9383148 tttcctccttaattttctctctagagatagattagggatgccatttactagatttcatatgtcttgattgtttccctccctcctga 9383233  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 9383304 - 9383339
Alignment:
Q  189 catctcctgacttttatattgaatttctagctttat 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  9383304 catctcctgacttttatattgaatttctagctttat 9383339  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 44301921 - 44301835
Alignment:
Q  22 ctttcctcctgaattttctctctagagatagattagggatgccatttactagatttcatatgtcttgattgtttccatccctcctga 108  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  44301921 ctttcctccttaattttctctctagagatagattagggatgccatttactagatttcataagtcttgattgtttccctccctcctga 44301835  T

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Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 15484164 - 15484081
Alignment:
Q  22 ctttcctcctgaattttctctctagagatagattagggatgccatttactagatttcatatgtcttgattgtttccatccctcc 105  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15484164 ctttcttccttaattttctctctagagatagattagggatgccatttactagatttcatatgtcttgattgtttccctccctcc 15484081  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 15483997 - 15483958
Alignment:
Q  185 caggcatctcctgacttttatattgaatttctagctttat 224  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  15483997 caggcatcacctgacttttatattgaatttctagctttat 15483958  T

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Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 30731652 - 30731735
Alignment:
Q  22 ctttcctcctgaattttctctctagagatagattagggatgccatttactagatttcatatgtcttgattgtttccatccctcc 105  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30731652 ctttcttccttaattttctctctagagatagattagggatgccatttactagatttcatatgtcttgattgtttccctccctcc 30731735  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 30731819 - 30731858
Alignment:
Q  185 caggcatctcctgacttttatattgaatttctagctttat 224  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  30731819 caggcatcacctgacttttatattgaatttctagctttat 30731858  T

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