View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1797_low_3 (Length: 300)
Name: NF1797_low_3
Description: NF1797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1797_low_3 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 89 - 300
Target Start/End: Original strand, 30266746 - 30266957
Alignment:
| Q |
89 |
gaacaagtttatcatcaaaaacccagtttgaaagcaaacaataatcaaagtagttgtgcattgtttgttggaagttgggtttttgatgaaagttaccctt |
188 |
Q |
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| T |
30266746 |
gaacaagtttatcatcaaaaacccagtttgaaagcaaacaataatcaaagtagttgtgcattgtttgtaggaagttgggtttttgatgaaagttaccctt |
30266845 |
T |
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| Q |
189 |
tttatcaatcttctagctgtgaaattatagacccggaatttaattgtcaaatgaatggtcgtcctgattctgattaccttaaataccgttggaaaccact |
288 |
Q |
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| T |
30266846 |
tttatcaatcttctagctgtgaaattatagacccagaatttaattgtcaaatgaatggtcgtcctgattctgattaccttaaataccgttggaaaccact |
30266945 |
T |
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| Q |
289 |
caattgtgagct |
300 |
Q |
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| T |
30266946 |
caattgtgagct |
30266957 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 300
Target Start/End: Original strand, 25958977 - 25959134
Alignment:
| Q |
143 |
tgtgcattgtttgttggaagttgggtttttgatgaaagttaccctttttatcaatcttctagctgtgaaattatagacccggaatttaattgtcaaatga |
242 |
Q |
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| T |
25958977 |
tgtgcattgtttgtaggaacatggattcctgatgacacttaccctttttaccaatcttcaaactgtcccatgatagatccacagttcaactgtaaaatgt |
25959076 |
T |
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| Q |
243 |
atggtcgtcctgattctgattaccttaaataccgttggaaaccactcaattgtgagct |
300 |
Q |
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| T |
25959077 |
ttggtcgtcctgattctgattaccttagatatagatggagaccacttaactgtgagct |
25959134 |
T |
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