View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1797_low_5 (Length: 255)
Name: NF1797_low_5
Description: NF1797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1797_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 4006151 - 4006286
Alignment:
| Q |
106 |
ctatcacattaaaaaattatcaacatatttgttttcccgtcagttataaacatattgaaattaatacaatcacatacacacaaaac-agt---nnnnnnn |
201 |
Q |
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| T |
4006151 |
ctatcacattaaaaaattatcaacatatttgttttcc-gtcagttataaacatattgaaattagtacaatcatatacacacaaaacaagtaaaaaaaaaa |
4006249 |
T |
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| Q |
202 |
nctgcattcaaacatgacctgctcgaattcctacaca |
238 |
Q |
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| T |
4006250 |
actgcattcaaacatgacctgctcgaattcctacaca |
4006286 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 4004994 - 4005048
Alignment:
| Q |
19 |
catagatccaaacatgcacttggacactctaccattgtcaccaaacaccctccac |
73 |
Q |
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| T |
4004994 |
catagatccaaacatgcacttggacactctaccattgtcaccaaacaccctccac |
4005048 |
T |
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