View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1797_low_6 (Length: 244)
Name: NF1797_low_6
Description: NF1797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1797_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 30267166 - 30266941
Alignment:
| Q |
13 |
catcattcaaattatactaagcaaccacacactacattatcttaaaaacacaatattttgctatgaagcacaaacccaaacacgaacaccagacacgaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30267166 |
catcattcaaattatactaagcaaccacacacta---tatcttaaaaacactatattttgctatgaagcacaaacccaaacacgaacaccagacacgaca |
30267070 |
T |
|
| Q |
113 |
ttgacacttgagaaaatgaattattgaacataatcacgtgtcagacaccagacacatctttgatcagacgtgttaatgctacatatgcttttattatttt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30267069 |
ttgacacttgagaaaatgaattattgaacataatcacgtgtcagacaccagacacatctttgatcagacgtgttaatgctacatatgcttttattatttt |
30266970 |
T |
|
| Q |
213 |
ttataccttgggagctcacaattgagtgg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30266969 |
ttataccttgggagctcacaattgagtgg |
30266941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 5660347 - 5660319
Alignment:
| Q |
152 |
gtcagacaccagacacatctttgatcaga |
180 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5660347 |
gtcagacaccagacacatctttgatcaga |
5660319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University