View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17980_low_1 (Length: 303)
Name: NF17980_low_1
Description: NF17980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17980_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 27735009 - 27734718
Alignment:
| Q |
1 |
attccataaaactaaaaacctatgtaactatatacattcaccaatggtattnnnnnnnn-taatgaaattgttgttttcagttagaagtgaatatcgaca |
99 |
Q |
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| T |
27735009 |
attccataaaactaaaaacctatgtaactatatacatacaccaatggtattaaaagaaaataatgaaattgttgttttcagttagaagtaaatatcgaca |
27734910 |
T |
|
| Q |
100 |
ctgtcttgataaacgtatttggtgactggagaatatacagttagaatacactgtattgataaattaattgatccaactcatcctaaagtccatggtcgat |
199 |
Q |
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| T |
27734909 |
ctgtcctgataaacgtatttggtgactggagaatatacagttagaatacactgtattgataaattaattgatccaactcatcctaaagtccatggtcgat |
27734810 |
T |
|
| Q |
200 |
ggaatctcatttgaaagttagggtcacggccaaactctgttatggtcactgccaaaatctgatttgatagatatgtcgtaaatggttgccta |
291 |
Q |
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| T |
27734809 |
ggaatctcatttgaaagttagggtcacggccaaactctgttatggtcactgccaaaatctgatttgatagatatgtcgtaaatggttgccta |
27734718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27723043 - 27722822
Alignment:
| Q |
1 |
attccataaaactaaaaacctatgtaactatatacattcaccaatggtattnnnnnnnn-----taatgaaattgttgttttcagttagaagtgaatatc |
95 |
Q |
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| T |
27723043 |
attccataaaactagaaacctatgtaactatatacatacaccaatggtattagaaaaataaaaataaaggaattgctgttttcagttaaaagtgaatatt |
27722944 |
T |
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| Q |
96 |
gacactgtcttgataaacgtatttggtgactggagaatatacagttagaatacactgtattgataaattaattgatccaactcatcctaaagtccatggt |
195 |
Q |
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| T |
27722943 |
gacactgtcttgataagcgtatt-gatgaagttagaag-tgcttatcga---cactgtattgatgaattaattgatccaactcaccttagaattcatggt |
27722849 |
T |
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| Q |
196 |
cgatggaatctcatttgaaagttaggg |
222 |
Q |
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| T |
27722848 |
cgatggaatctcatttgaaagttaggg |
27722822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 14680625 - 14680553
Alignment:
| Q |
147 |
acactgtattgataaattaattgatccaactcatcctaaagtccatggtcgatggaatctcatttgaaagtta |
219 |
Q |
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| T |
14680625 |
acactgtattgatgaattaattgatccaactcatcatatagttcatggtcgatggaatctcatttgaaagtta |
14680553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 26092359 - 26092293
Alignment:
| Q |
74 |
ttttcagttagaagtgaatatcgacactgtcttgataaacgtatttggtgactggagaatatacagt |
140 |
Q |
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| T |
26092359 |
ttttcagttagaagtgaatatcgacactgtattcataaacatatttggtgacgggagaatatgcagt |
26092293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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