View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17980_low_2 (Length: 243)
Name: NF17980_low_2
Description: NF17980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17980_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 54778953 - 54779186
Alignment:
| Q |
1 |
tcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcactctcccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54778953 |
tcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcactctcccaa |
54779052 |
T |
|
| Q |
101 |
aagaaataccacacacaactaaataactaaaaattgttagaaaacagtctgctagtagttgaaagaaagctatgaaacactgacacaaacactgcagatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||| |
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| T |
54779053 |
aagaaataccacacacaactaaataactaaaaattgttagaaaacagtctgctagtaattgaaagaaagctatgaaacactgacactgacactgcacatg |
54779152 |
T |
|
| Q |
201 |
acatagacacatcatgagaaaatgaattatttga |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
54779153 |
acatagacacatcatgagaaaatgaattatttga |
54779186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 54790192 - 54789961
Alignment:
| Q |
1 |
tcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcactctcccaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
54790192 |
tcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaatgacatgcactctcgcaa |
54790093 |
T |
|
| Q |
101 |
aagaaataccacacacaactaaataactaaaaattgttagaaaacagtctgctagtagttgaaagaaagctatgaaacactgacacaaacactgcagatg |
200 |
Q |
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| T |
54790092 |
aagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgcaaataattgaaagaaagctatgaaacact--aacagacacttgacaca |
54789995 |
T |
|
| Q |
201 |
acatagacacatcatgagaaaatgaattatttga |
234 |
Q |
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| T |
54789994 |
acatagacacataatgagaacatgaattatttga |
54789961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 52282849 - 52282616
Alignment:
| Q |
1 |
tcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcactctcc--- |
97 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
52282849 |
tcagaacatataaggaaaactacagccatgcatgaagcagagatacatcg---tgcgctacttattaaaaatatagattcagtaacatgcactctcctcc |
52282753 |
T |
|
| Q |
98 |
caaaagaaataccacacacaactaaataactaaaaattgttagaaaacagtctgctagtagttgaaagaaagctatgaaacactgacacaaacactgcag |
197 |
Q |
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| T |
52282752 |
caaaagaaaaaccacacacaactaaataactaaaaattgttaaaatacagtctgcttctaattgaaagaaagctatgaaacactgacataaacactggac |
52282653 |
T |
|
| Q |
198 |
atgacatagacacatcat-gagaaaatgaattatttg |
233 |
Q |
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| ||||||||||| |||| |||| || |||||||||| |
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| T |
52282652 |
acgacatagacacgtcatggagagaacgaattatttg |
52282616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 85 - 234
Target Start/End: Complemental strand, 19296149 - 19296002
Alignment:
| Q |
85 |
acatgcactctcccaaaagaaataccacacacaactaaataactaaaaattgttagaaaacagtctgctagtagttgaaagaaagctatgaaacactgac |
184 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||||||||| |
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| T |
19296149 |
acatgcactctcgcaaaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgcaaataattgaaagaaagctatgaaacact--a |
19296052 |
T |
|
| Q |
185 |
acaaacactgcagatgacatagacacatcatgagaaaatgaattatttga |
234 |
Q |
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||| ||||| | | |||||||||||| ||||||| ||||||||||||| |
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| T |
19296051 |
acagacacttgacacaacatagacacataatgagaacatgaattatttga |
19296002 |
T |
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