View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17981_high_1 (Length: 717)

Name: NF17981_high_1
Description: NF17981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17981_high_1
NF17981_high_1
[»] chr4 (3 HSPs)
chr4 (15-704)||(34294642-34295327)
chr4 (419-587)||(41501554-41501732)
chr4 (419-574)||(19140566-19140718)
[»] chr6 (1 HSPs)
chr6 (15-428)||(3761333-3761746)
[»] chr5 (3 HSPs)
chr5 (15-331)||(12955288-12955597)
chr5 (344-421)||(12954858-12954935)
chr5 (419-586)||(29635832-29636009)
[»] chr8 (2 HSPs)
chr8 (44-203)||(3694298-3694456)
chr8 (499-568)||(3694877-3694946)
[»] chr7 (2 HSPs)
chr7 (51-213)||(39051478-39051639)
chr7 (419-575)||(39052260-39052426)
[»] scaffold0049 (1 HSPs)
scaffold0049 (419-587)||(45499-45677)
[»] chr3 (1 HSPs)
chr3 (419-574)||(678399-678568)
[»] chr1 (3 HSPs)
chr1 (419-496)||(22580903-22580980)
chr1 (419-587)||(33053653-33053831)
chr1 (430-568)||(34059510-34059660)


Alignment Details
Target: chr4 (Bit Score: 575; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 15 - 704
Target Start/End: Complemental strand, 34295327 - 34294642
Alignment:
15 acaaacttcaagattcaacttaggtatgtatgattatgaaataaaaaacaagattctttcaacacaagttgcaagttggagagcatgtttgggtaaaaat 114  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34295327 acaaactttaagattcaacttaggtatgtatggttatgaaataaaaaacaagattctttcaacacaagttgcaagttggagagcatgtttgggtaaaaat 34295228  T
115 gttgtcatgaaaaatatactaactattaactatgggagtatgaacaaaaggttcaaaacaatgtcacaaaaactgtaaaattagaagcttattcaatgag 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
34295227 gttgtcatgaaaaatatactaactattaactatgggagtatgaacaaaaggttcaaaacaatgtcacaaaaactgtaaaattaggagcttattcaatgag 34295128  T
215 taaaattagagtaaaacaatgtcacataaactattaaaacactgtcccataatcataaactgtacattcatataacacttcagtttaacaaataagccta 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||||||||||||||||||||||    
34295127 taaaattagagtaaaacaatgtcacataaactattaaaacactgtcccata--------ctgtacattaatataacacttcagtttaacaaataagccta 34295036  T
315 ctggtttacacggcaatattgagttttacaaattcatataacacttgagttttataaattcagatcaaagttggattcataatttctggacattatattc 414  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34295035 ctgatttacacggcaatattgagttttacaaattcatataacacttgagttttataaattcagatcaaagttggattcataatttctggacattatattc 34294936  T
415 atataaccctaaaccaaagattttgaattgattaccttagtggtagattcaatgtctttgaagacttccaaatgtccctttgatggcggaggacggcgaa 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
34294935 atataaccctaaaccaaagattttgaattgattaccttagtggtagattcaatgtctttgaaggcttccaaatgtccctttgatggcggaggacggcgaa 34294836  T
515 atagggtggagatagtggtgtttctctgcaacagatttttgagatagaga--gagaactcaaacgtgactgtagaaatggagggagttggatgaaagaac 612  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||    
34294835 atagggtggagatagtggtggttctctgcaacagattgttgagatagagagagagaactcaaacgtgactgtagaaatggagggagttggatgaaacaac 34294736  T
613 aagctcaactgaatagaaatgttggcacatagtgga--nnnnnnnnccgaccctaatgccaaacaaaatgaaacttttgacccctttcagaatt 704  Q
    ||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||| |||| |||||    
34294735 aagctcaactgaatagaaatgttggcacatagtggattttttttttccgaccctaatgccaaacaaaatgaaacttttgacccgtttctgaatt 34294642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 419 - 587
Target Start/End: Original strand, 41501554 - 41501732
Alignment:
419 aaccctaaaccaaagattttgaattgattaccttagtggtagattcaatgtctttgaagacttccaaatgtcccttt----------gatggcggaggac 508  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||  |||   |||||||||||          || ||||||||||    
41501554 aaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaagcttttgaatgtccctttgcggttgcacgacggcggaggac 41501653  T
509 ggcgaaatagggtggagatagtggtgtttctctgcaacagatttttgagatagagagagaactcaaacgtgactgtaga 587  Q
    ||| ||||| ||||||||  |||||| ||   |||||| |||||||||||| ||||||||||| |||||||| ||||||    
41501654 ggcaaaataaggtggagacggtggtgatttattgcaactgatttttgagatggagagagaactaaaacgtgattgtaga 41501732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 419 - 574
Target Start/End: Complemental strand, 19140718 - 19140566
Alignment:
419 aaccctaaaccaaagattttgaattgattaccttagtggtagattcaatgtctttgaagacttccaaatgtccctttgatggcggaggacggcgaaatag 518  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| |||   |||||||||||       | ||||| |||||||     
19140718 aaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtcccttt-------gtggacgacgaaataa 19140626  T
519 ggtggagatagtggtgtttctc----tgcaacagatttttgagatagagagagaactcaa 574  Q
    || ||||| ||||||| ||| |    ||||||||||||||||||||||||||||||||||    
19140625 ggcggagaaagtggtggttcgcgcgttgcaacagatttttgagatagagagagaactcaa 19140566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Original strand, 3761333 - 3761746
Alignment:
15 acaaacttcaagattcaacttaggtatgtatgattatgaaataaaaaacaagattctttcaacacaagttgcaagttggagagcatgtttgggtaaaaat 114  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3761333 acaaactttaagattcaacttaggtatgtatgattatgaaataaaaaacaagattctttcaacacaagttgcaagttggagagcatgtttgggtaaaaat 3761432  T
115 gttgtcatgaaaaatatactaactattaactatgggagtatgaacaaaaggttcaaaacaatgtcacaaaaactgtaaaattagaagcttattcaatgag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3761433 gttgtcatgaaaaatatactaactattaactatgggagtatgaacaaaaggttcaaaacaatgtcacaaaaactgtaaaattagaagcttattcaatgag 3761532  T
215 taaaattagagtaaaacaatgtcacataaactattaaaacactgtcccataatcataaactgtacattcatataacacttcagtttaacaaataagccta 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
3761533 taaaattagagtaaaacaatgtcacataaactattaaaacactgtcccgtaatcataaactgtacattcatataacacttcagtttaacaaataagccta 3761632  T
315 ctggtttacacggcaatattgagttttacaaattcatataacacttgagttttataaattcagatcaaagttggattcataatttctggacattatattc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3761633 ctggtttacacggcaatattgagttttacaaattcatataacacttgagttttataaattcagatcaaagttggattcataatttctggacattatattc 3761732  T
415 atataaccctaaac 428  Q
    ||||||||| ||||    
3761733 atataaccccaaac 3761746  T

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Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 12955597 - 12955288
Alignment:
15 acaaacttcaagattcaacttaggtatgtatgattatgaaataaaaaacaagattctttcaacacaagttgcaagttggagagcatgtttgggtaaaaat 114  Q
    |||||||| |||||||||| |||||||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||||||  | |||||||| |||||    
12955597 acaaactttaagattcaacctaggtatgcatgagtatgaaataaaaatcaacattctttcaacacaagttgcaagttggagactaagtttgggtcaaaat 12955498  T
115 gttgtcatgaaaaatatactaactattaactatgggagtatgaacaaaaggttcaaaacaatgtcacaaaaactgtaaaattagaagcttattcaatgag 214  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
12955497 gttgtcataaaaaatatactaactattaactatgggagtatgaacaaaa-gttcaaaacaatgtcacaaaaactgtaaaattagaagcttattgaatgag 12955399  T
215 taaaattagagtaaaacaatgtcacataaactattaaaacactgtcccataatcataaactgtacattcatataacacttcagtttaacaaataagccta 314  Q
    |||||||| ||||||| |||||||||||||| ||||||||| ||||       ||| | ||||| ||||||||| ||||||||||| | |||||| ||||    
12955398 taaaattaaagtaaaataatgtcacataaaccattaaaacaatgtc------acatgagctgtaaattcatatagcacttcagttttaaaaataatccta 12955305  T
315 ctggtttacacggcaat 331  Q
    |||||||||| ||||||    
12955304 ctggtttacatggcaat 12955288  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 344 - 421
Target Start/End: Complemental strand, 12954935 - 12954858
Alignment:
344 aaattcatataacacttgagttttataaattcagatcaaagttggattcataatttctggacattatattcatataac 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
12954935 aaattcatataacacttgagttttataaattcagatcaaagttggattcataatttctggacactatattcatataac 12954858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 419 - 586
Target Start/End: Complemental strand, 29636009 - 29635832
Alignment:
419 aaccctaaaccaaagattttgaattgattaccttagtggtagattcaatgtctttgaagacttccaaatgtcccttt----------gatggcggaggac 508  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||  |||   |||||||||||          || ||||||||||    
29636009 aaccctaaaccaaagatttttaattgattaccttgttggtagattcaatgtctttgaaagcttttgaatgtccctttgcggttgcacgacggcggaggac 29635910  T
509 ggcgaaatagggtggagatagtggtg-tttctctgcaacagatttttgagatagagagagaactcaaacgtgactgtag 586  Q
    ||||||||| ||||||||  |||||| ||| || ||||| |||||||||||| ||||||||||| |||||||| |||||    
29635909 ggcgaaataaggtggagacggtggtgatttatc-gcaactgatttttgagatggagagagaactaaaacgtgattgtag 29635832  T

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Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 3694298 - 3694456
Alignment:
44 atgattatgaaataaaaaacaagattctttcaacacaagttgcaagttggagagcatgtttgggtaaaaatgttgtcatgaa-aaatatactaactatta 142  Q
    |||| ||||||||||||||||| ||||||||   ||||||||||||||||| | ||| ||||||||||||| ||||||| || |||||||||||||||||    
3694298 atgagtatgaaataaaaaacaacattctttctcaacaagttgcaagttgga-accatttttgggtaaaaatattgtcataaataaatatactaactatta 3694396  T
143 actatgggagtatgaacaaaaggttcaaaacaatgtcacaaaaactgtaaaattagaagct 203  Q
    ||||||| ||||||| ||||| ||| |||||||||||| | ||| ||||||||||||||||    
3694397 actatggaagtatgaccaaaa-gttaaaaacaatgtcatagaaagtgtaaaattagaagct 3694456  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 499 - 568
Target Start/End: Original strand, 3694877 - 3694946
Alignment:
499 ggcggaggacggcgaaatagggtggagatagtggtgtttctctgcaacagatttttgagatagagagaga 568  Q
    ||||||| ||||||||||||||||||||  |||||| ||  ||||||||||||||| |||| ||||||||    
3694877 ggcggagaacggcgaaatagggtggagaccgtggtgatttgctgcaacagattttttagatggagagaga 3694946  T

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Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 51 - 213
Target Start/End: Original strand, 39051478 - 39051639
Alignment:
51 tgaaataaaaaacaagattctttcaacacaagttgcaagttggagagcatgtttgggtaaaaatgttgtcatgaa-aaatatactaactattaactatgg 149  Q
    ||||||||||||||| ||||||||   |||||||| |||||||| | ||||||||||||||||| ||||||| || ||||||||||||||||||||||||    
39051478 tgaaataaaaaacaacattctttctcaacaagttgtaagttgga-accatgtttgggtaaaaatattgtcataaataaatatactaactattaactatgg 39051576  T
150 gagtatgaacaaaaggttcaaaacaatgtcacaaaaactgtaaaattagaagcttattcaatga 213  Q
     ||||||| ||||| ||| |||||||||||| | ||| ||||||||||||||||| || |||||    
39051577 aagtatgaccaaaa-gttaaaaacaatgtcatagaaagtgtaaaattagaagcttgttgaatga 39051639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 419 - 575
Target Start/End: Original strand, 39052260 - 39052426
Alignment:
419 aaccctaaaccaaagattttgaattgattaccttagtggtagattcaatgtctttgaagacttccaaatgtcccttt----------gatggcggaggac 508  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| |||  |||  |||||||||||          || ||||||| ||    
39052260 aaccctaaaccaaagatttttaattgattaccttggtggtagattcagtgtctttaaaggtttctgaatgtccctttgtggttgcacgacggcggagaac 39052359  T
509 ggcgaaatagggtggagatagtggtgtttctctgcaacagatttttgagatagagagagaactcaaa 575  Q
    ||||||||||| ||||||  |||||| ||  ||||||||||||||| |||| |||||||| ||||||    
39052360 ggcgaaataggatggagaccgtggtgatttgctgcaacagattttttagatggagagagagctcaaa 39052426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 419 - 587
Target Start/End: Complemental strand, 45677 - 45499
Alignment:
419 aaccctaaaccaaagattttgaattgattaccttagtggtagattcaatgtctttgaagacttccaaatgtcccttt----------gatggcggaggac 508  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||  |||   |||||||||||          || ||||||||||    
45677 aaccctaaaccaaatatttttaattgattaccttggtggtagattcaatgtctttgaaagcttttgaatgtccctttgcagttgtacgacggcggaggac 45578  T
509 ggcgaaatagggtggagatagtggtgtttctctgcaacagatttttgagatagagagagaactcaaacgtgactgtaga 587  Q
    || |||||| ||||||||  |||||| ||   |||||| |||||||||||| ||||||||||| |||||||| ||||||    
45577 ggtgaaataaggtggagacggtggtgatttattgcaactgatttttgagatggagagagaactaaaacgtgattgtaga 45499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 419 - 574
Target Start/End: Original strand, 678399 - 678568
Alignment:
419 aaccctaaaccaaagattttgaattgattaccttagtggtagattcaatgtctttgaagacttccaaatgtccctttg----------atggcggaggac 508  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| |||   ||||||||||||          | | | ||||||    
678399 aaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtccctttgtggttgcacgacgacagaggac 678498  T
509 ggcgaaatagggtggagatagtggtgtttctc----tgcaacagatttttgagatagagagagaactcaa 574  Q
    | ||||||| || ||||| ||||||| ||| |    ||||||| ||||||||||||||||||||||||||    
678499 gacgaaataaggcggagaaagtggtggttcgcgcgttgcaacaaatttttgagatagagagagaactcaa 678568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 419 - 496
Target Start/End: Complemental strand, 22580980 - 22580903
Alignment:
419 aaccctaaaccaaagattttgaattgattaccttagtggtagattcaatgtctttgaagacttccaaatgtccctttg 496  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| |||   ||||||||||||    
22580980 aaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtccctttg 22580903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 419 - 587
Target Start/End: Original strand, 33053653 - 33053831
Alignment:
419 aaccctaaaccaaagattttgaattgattaccttagtggtagattcaatgtctttgaagacttccaaatgtccctttg----------atggcggaggac 508  Q
    |||| ||||||||||||||| ||||||||||||| ||||| | |||||||||||||||| |||   |||  |||||||          | | ||||||||    
33053653 aaccttaaaccaaagatttttaattgattaccttggtggttggttcaatgtctttgaaggcttttgaatacccctttgtggttgcacgacgtcggaggac 33053752  T
509 ggcgaaatagggtggagatagtggtgtttctctgcaacagatttttgagatagagagagaactcaaacgtgactgtaga 587  Q
    ||||||||| ||||||||  |||||| ||   |||||| |||||||||||| ||||||||||| |||||||| ||||||    
33053753 ggcgaaatacggtggagacggtggtggtttattgcaactgatttttgagatggagagagaactaaaacgtgattgtaga 33053831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 430 - 568
Target Start/End: Complemental strand, 34059660 - 34059510
Alignment:
430 aaagattttgaattgattaccttagtggtagattcaatgtctttgaagacttccaaatgtcccttt----------gatggcggaggacggcgaaatagg 519  Q
    ||||||||  ||||||||||||| |||||||||||||||||||||||| |||   |||||| ||||          || ||| ||||||| ||||||| |    
34059660 aaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtcactttgtggttgcacgacggcagaggacgacgaaataag 34059561  T
520 gtggagatagtggtgtttctc--tgcaacagatttttgagatagagagaga 568  Q
    | ||||| ||||||| ||| |  ||||||||||||||||||||||||||||    
34059560 gcggagaaagtggtggttcgcgttgcaacagatttttgagatagagagaga 34059510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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