View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17981_high_5 (Length: 471)
Name: NF17981_high_5
Description: NF17981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17981_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Complemental strand, 8706439 - 8705995
Alignment:
| Q |
17 |
caataatcattgaactgatgaacttatcttcctcttcaatagttttaaatggactctgaacaatgatgttgtcatttctaaaataggcatcgtgaagtcg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8706439 |
caataatcattgaactgatgaacttatcttcctcttcaatagttttaaatggactctgaacaatgatgttgtcatttctaaaataggcatcgtgaagtcg |
8706340 |
T |
|
| Q |
117 |
tgagtttgggattgatacttcctgctcattttcagagattgaagactgttgtggtgagaaaggaaataaattttcttcctgtgcctgaaatattgattcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8706339 |
tgagtttgggattgatacttcctgctcattttcagagattgaagactgttgtggtgagaaaggaaagaaattttcttcctgtgcctgaaatattgattcc |
8706240 |
T |
|
| Q |
217 |
atatttatttctggcaaagtttcactcacctataaaacaaatataagttctcagcatgtctcatgtagaaaggtttaaatccaaaactttgttctcaaaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8706239 |
atatttatttctggcaaagtttcactcacctataaaacaaatataagttctcagcatgtttcatgtagaaaggcttaaatccaaaactttgttctcaaaa |
8706140 |
T |
|
| Q |
317 |
tttctatcatcatttaccaaggatgaactccttacatcaggaattccttcaaaaatttcttgactttcatgatcagaactcatgtgtctacttggctccc |
416 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8706139 |
tttctat-atcatttatcaaggatgaactccttacatcaggaattccttcaaaaatttcttgactttcatggtcagaactcatgtgtctacttggctccc |
8706041 |
T |
|
| Q |
417 |
cttcatcatgtatatctgcttcagcttccttttcagcttttttctc |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8706040 |
cttcatcatgtatatctgcttcagcttccttttcagcttttttctc |
8705995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 283 - 424
Target Start/End: Complemental strand, 8691511 - 8691370
Alignment:
| Q |
283 |
agaaaggtttaaatccaaaactttgttctcaaaatttctatcatcatttaccaaggatgaactccttacatcaggaattccttcaaaaatttcttgactt |
382 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||| |||||||| || |
|
|
| T |
8691511 |
agaaaggtttaaaattaaaactttgttttcaaaatttctattgtcatttatcaagaatgaaatccttacatcaggaattccttcaactgtttcttgattt |
8691412 |
T |
|
| Q |
383 |
tcatgatcagaactcatgtgtctacttggctccccttcatca |
424 |
Q |
| |
|
|| ||||| ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
8691411 |
tcgtgatcggaactcatgtgtcgactaggctccccttcatca |
8691370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 249 - 424
Target Start/End: Complemental strand, 8744817 - 8744652
Alignment:
| Q |
249 |
taaaacaaatataagttctcagcatgtctcatgtagaaaggtttaaatccaaaactttgttctcaaaatttctatcatcatttaccaaggatgaactcct |
348 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||| || || |||| ||||||||||||| ||||||||||||| |||||||||||| || |
|
|
| T |
8744817 |
taaaacaagtataagttcttagcatgtttcatgtgaaattgtgtaaagccaaaactttgttttcaaaatttctat----------caaggatgaacttct |
8744728 |
T |
|
| Q |
349 |
tacatcaggaattccttcaaaaatttcttgactttcatgatcagaactcatgtgtctacttggctccccttcatca |
424 |
Q |
| |
|
||||| | ||||||||| || |||||||| |||| | | ||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
8744727 |
tacatttgaaattccttctaatgtttcttgattttcgtagtgagagctcatgtgtctacttgactcccctacatca |
8744652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 325
Target Start/End: Complemental strand, 8724978 - 8724900
Alignment:
| Q |
247 |
tataaaacaaatataagttctcagcatgtctcatgtagaaaggtttaaatccaaaactttgttctcaaaatttctatca |
325 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| ||||||| |||| |||| |||| | | | ||||||||||||| |
|
|
| T |
8724978 |
tataaaacaagtataagttctcagcatgtttcatgtggaaaggtgtaaaaccaagacttggctttgaaaatttctatca |
8724900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 8745061 - 8744915
Alignment:
| Q |
21 |
aatcattgaactgatgaacttatcttcctcttcaatagttttaaatggactctgaacaatgatgttgtcatttctaaaataggcatcgtgaagtcgtgag |
120 |
Q |
| |
|
|||||||||| | ||||| |||| |||||||||| | |||| ||| |||||||||| || |||| |||||||||||||| | | |||| | ||||| |
|
|
| T |
8745061 |
aatcattgaattaatgaagttattttcctcttcattggtttcaaagggactctgaataaccatgtcttcatttctaaaataatctccttgaaattgtgag |
8744962 |
T |
|
| Q |
121 |
tttgggattgatacttcctgctcattttcagagattgaagactgttg |
167 |
Q |
| |
|
|||| || |||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
8744961 |
tttgagaaatatacttcccgctcattttcatagattgaagattgttg |
8744915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 8691690 - 8691629
Alignment:
| Q |
130 |
gatacttcctgctcattttcagagattgaagactgttgtggtgagaaaggaaataaattttc |
191 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||| | || |||||||||||| ||||||| |
|
|
| T |
8691690 |
gatacttcgttctcattttcagagattgaaggctggtatgttgagaaaggaaagtaattttc |
8691629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 8725033 - 8725001
Alignment:
| Q |
204 |
aaatattgattccatatttatttctggcaaagt |
236 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
8725033 |
aaatattgattgcatatttatttctggcaaagt |
8725001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University