View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17981_low_10 (Length: 372)
Name: NF17981_low_10
Description: NF17981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17981_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 233 - 355
Target Start/End: Complemental strand, 49522270 - 49522148
Alignment:
| Q |
233 |
agaaccatctaccgtatgtgcagtcaaaagcttcctcatgactattccatgatcctgtatgacaagtataaggaagtgtttgaagagtatatcaaatcaa |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49522270 |
agaaccatctaccgtatgtgcagtcaaaagcttcctcatgactattccatgatcctgtatgacaagtataaggaagtgtttgaagagtatatcaaatcaa |
49522171 |
T |
|
| Q |
333 |
ctgtgagtaacaacgttaaacat |
355 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
49522170 |
ctgtgagtaacaacgttaaacat |
49522148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 4 - 167
Target Start/End: Complemental strand, 49522488 - 49522337
Alignment:
| Q |
4 |
atgtcgaagaatatcaactttgaagaaggatggggttttatccagcaaggtatcaagaaactcaagaacaatctagaaggctttgaaggctttcatgaga |
103 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
49522488 |
atgtcaaagattatcaactttgaagaaggatggggttttatccagcaaggtatcaagaaactcaagaataatctagaagg---------ctttcatgaga |
49522398 |
T |
|
| Q |
104 |
ctcctcagttcactgctgacgattactcgttgctatatacgtacgtacgtttccctgaaacaat |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49522397 |
---ctcagttcactgctgacgattactcgttgctatatacgtacgtacgtttccctgaaacaat |
49522337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 49532818 - 49532746
Alignment:
| Q |
15 |
tatcaactttgaagaaggatggggttttatccagcaaggtatcaagaaactcaagaacaatctagaaggcttt |
87 |
Q |
| |
|
||||||||||||| |||||||| || |||| ||| | || |||||||| ||| |||||| ||||||||||||| |
|
|
| T |
49532818 |
tatcaactttgaacaaggatggagtattatgcagaagggaatcaagaagctccagaacattctagaaggcttt |
49532746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 49486225 - 49486169
Alignment:
| Q |
288 |
tgtatgacaagtataaggaagtgtttgaagagtatatcaaatcaactgtgagtaaca |
344 |
Q |
| |
|
||||||| ||||| |||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
49486225 |
tgtatgaaaagtacaaggaaacatttgaagagtacatcaaatcaacggtgagtaaca |
49486169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University