View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17981_low_12 (Length: 360)
Name: NF17981_low_12
Description: NF17981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17981_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 47211723 - 47212012
Alignment:
| Q |
1 |
ggttggaggatatctctgggattgggaggtatcccagcattactcctcactttaggggcttacttggtagtggacaccccaaatagtctcattgaacgtg |
100 |
Q |
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| T |
47211723 |
ggttggaggatatctctgggattgggaggtatcccagcattactcctcactttaggggcttacttggtagtggacaccccaaatagtctcattgaacgtg |
47211822 |
T |
|
| Q |
101 |
gtcacttggacaaaggaaaagctgttctgagaaagattcgtggcacggacaacattgaacccgagttcttagagttagtagaagcaagtcgtgttgctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47211823 |
gtcacttggacaaaggaaaagctgttctgagaaagattcgtggcacggacaacattgaacccgagttcttagagttagtagaagcaagtcgtgttgctaa |
47211922 |
T |
|
| Q |
201 |
agaggtgaaacatccattcagaaatctcctcaagcgcaataaccgacctcaacttgtcatttccattgccctaatggtttgtactaatct |
290 |
Q |
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| T |
47211923 |
agaggtgaaacatccattcagaaatctcctcaagcgcaataaccgacctcaacttgtcatttccattgctctaatggtttgtactaatct |
47212012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 47212051 - 47212086
Alignment:
| Q |
290 |
tcatggttgcaatcgcttaacaattcttgttttata |
325 |
Q |
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| T |
47212051 |
tcatggttgcaatcgcttaacaattcttgttttata |
47212086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 65 - 266
Target Start/End: Complemental strand, 749299 - 749098
Alignment:
| Q |
65 |
tggtagtggacaccccaaatagtctcattgaacgtggtcacttggacaaaggaaaagctgttctgagaaagattcgtggcacggacaacattgaacccga |
164 |
Q |
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|||| ||||||||||| || ||||||||||| ||||||| | | || ||||||||||||| || | ||||||||||||||| ||||||||||||||||| |
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| T |
749299 |
tggttgtggacacccccaacagtctcattgagcgtggtcgccttgaagaaggaaaagctgtacttaaaaagattcgtggcactgacaacattgaacccga |
749200 |
T |
|
| Q |
165 |
gttcttagag-ttagtagaagcaagtcgtgttgctaaagaggtgaaacatccattcagaaatctcctcaagcgcaataaccgacctcaacttgtcatttc |
263 |
Q |
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|||||| ||| || || || ||||||||||||||||||||||| || || || || || ||||| ||||| ||||| ||||||||||||||| ||||||| |
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| T |
749199 |
gttcttggagctttgt-gaggcaagtcgtgttgctaaagaggtcaagcacccttttaggaatcttctcaaacgcaagaaccgacctcaacttatcatttc |
749101 |
T |
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| Q |
264 |
cat |
266 |
Q |
| |
|
||| |
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|
| T |
749100 |
cat |
749098 |
T |
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