View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17981_low_15 (Length: 273)
Name: NF17981_low_15
Description: NF17981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17981_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 26085581 - 26085335
Alignment:
| Q |
10 |
gcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttgctggatgcat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26085581 |
gcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttgctggatgcat |
26085482 |
T |
|
| Q |
110 |
catagttttcttttttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttca |
209 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26085481 |
catagttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttca |
26085382 |
T |
|
| Q |
210 |
tcattgaagttctctaacttcaatttgtaattttataatacctttct |
256 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26085381 |
tcattgaagttctctaacttcaattagtaattttataatacctttct |
26085335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 26111918 - 26111716
Alignment:
| Q |
10 |
gcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttgctggatgcat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26111918 |
gcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttattggatgcat |
26111819 |
T |
|
| Q |
110 |
catagttttcttttttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26111818 |
catagttttcttttttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttca |
26111719 |
T |
|
| Q |
210 |
tca |
212 |
Q |
| |
|
||| |
|
|
| T |
26111718 |
tca |
26111716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 26068006 - 26067804
Alignment:
| Q |
10 |
gcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttgctggatgcat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26068006 |
gcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttactggatgcat |
26067907 |
T |
|
| Q |
110 |
catagttttcttttttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttca |
209 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26067906 |
catagttttcttttttcctaaagacttctttgtttctcagtctattacctcaaatcgtcacctacctgttgctgtacccaagacccaggtttcattttca |
26067807 |
T |
|
| Q |
210 |
tca |
212 |
Q |
| |
|
||| |
|
|
| T |
26067806 |
tca |
26067804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 26056344 - 26056142
Alignment:
| Q |
10 |
gcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttgctggatgcat |
109 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26056344 |
gcagagaaagagaaggacccttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttactggatgcat |
26056245 |
T |
|
| Q |
110 |
catagttttcttttttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttca |
209 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26056244 |
catagttttcttttttcctaaagacttctttgtttctcagtctattacctcaaatcgtcacctacctgttgctgtacccaagacccaggtttcattttca |
26056145 |
T |
|
| Q |
210 |
tca |
212 |
Q |
| |
|
||| |
|
|
| T |
26056144 |
tca |
26056142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 26121444 - 26121243
Alignment:
| Q |
11 |
cagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttgctggatgcatc |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | |||| |||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26121444 |
cagagaaagagaaggacgcttgatgaagaacaactctcattctctactcatatcaataatcgttaccactgtaatcattggagttcttattggatgcatc |
26121345 |
T |
|
| Q |
111 |
atagttttcttttttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttcat |
210 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||| |||||||||||||||| |
|
|
| T |
26121344 |
ttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcat |
26121245 |
T |
|
| Q |
211 |
ca |
212 |
Q |
| |
|
|| |
|
|
| T |
26121244 |
ca |
26121243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 26128871 - 26128670
Alignment:
| Q |
11 |
cagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttgctggatgcatc |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| | |||||| |||||||| ||| ||||| |||||||||| | ||||||| ||||||||||| |
|
|
| T |
26128871 |
cagagaaagagaaggacccttgatgaagaacaacccttattctctaagcatatcaaagattgttaccgctgtaatcatagtagttcttactggatgcatc |
26128772 |
T |
|
| Q |
111 |
atagttttcttttttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttcat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | | ||| |||||| |||||||||||||||||| ||||||| |
|
|
| T |
26128771 |
atagttttcttttttcctaatgacttctttgcttctcaatccattacctcaattcgtctcttcccttttgctggacccaagacccaggtttctttttcat |
26128672 |
T |
|
| Q |
211 |
ca |
212 |
Q |
| |
|
|| |
|
|
| T |
26128671 |
ca |
26128670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 26038439 - 26038237
Alignment:
| Q |
10 |
gcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttgctggatgcat |
109 |
Q |
| |
|
||||||||||||||||||| || ||| |||| |||||| ||||||| || |||||||||| |||| ||||| | ||||| |||||| ||||||||| |
|
|
| T |
26038439 |
gcagagaaagagaaggacccttaatgcgaaacaaccctcattctctacgcaaatcaaggatcgttactgctgtagtaattggtgttcttattggatgcat |
26038340 |
T |
|
| Q |
110 |
catagttttcttttttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttca |
209 |
Q |
| |
|
| ||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||| | | |||||| || | |||| |||||||||| ||||||| |
|
|
| T |
26038339 |
cttagctttcttttttcctaatggcttctttgtttctcaatctattacatcaaatcgtcgcatcgctgttgttggatccaaaacccaggttttattttca |
26038240 |
T |
|
| Q |
210 |
tca |
212 |
Q |
| |
|
||| |
|
|
| T |
26038239 |
tca |
26038237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 26056610 - 26056653
Alignment:
| Q |
120 |
ttttttcctaatgacttctttgtttctcaatctattacctcaat |
163 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26056610 |
ttttttcctaatgacatctttgtttctcaatctattacctcaat |
26056653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 26065592 - 26065545
Alignment:
| Q |
102 |
ggatgcatcatagttttcttttttcctaatgacttctttgtttctcaa |
149 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
26065592 |
ggatgcatcttagctttcttttttcccaatgacttctttgtttctcaa |
26065545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University