View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17981_low_17 (Length: 250)
Name: NF17981_low_17
Description: NF17981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17981_low_17 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 7073356 - 7073592
Alignment:
| Q |
14 |
aaatcacaatttcctggaattttaaacacagaagtatccaacagctcttgcatacaaaaatgataggcactacgaaccgagtaattcccattagactctt |
113 |
Q |
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| T |
7073356 |
aaatctcaattccctggaattttaaacacataagtatccaacagctcttgcatacaaaaatgataggcactacgaaccgagtaatccccattagactctt |
7073455 |
T |
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| Q |
114 |
tgctccaaacaagcatgttctcttgaacacttgttaaagttatctatgattaatttttaatgaaaaatttaaccaatcatcagttttaataagatattct |
213 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7073456 |
tgctccaaacaagcatgtcctcttgaacaccagttaaagttatctacgattaatttttaatgaaaaatttaaccaatcatcagttttaataagatattct |
7073555 |
T |
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| Q |
214 |
tttccaataatattttttatctgcaacacttgaacac |
250 |
Q |
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| T |
7073556 |
tttccaatagtattttttatctgcaacacttgaacac |
7073592 |
T |
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Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 142
Target Start/End: Original strand, 17062587 - 17062715
Alignment:
| Q |
14 |
aaatcacaatttcctggaattttaaacacagaagtatccaacagctcttgcatacaaaaatgataggcactacgaaccgagtaattcccattagactctt |
113 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || ||||||||||| |
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| T |
17062587 |
aaatcccaattttctggaattttaaacacagaagtatccaacagctcttgcatacaaaaatgataggcactaggaaccgaataatccctattagactctt |
17062686 |
T |
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| Q |
114 |
tgctccaaacaagcatgttctcttgaaca |
142 |
Q |
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| T |
17062687 |
tgctccaaacaagcatgtcctcttgaaca |
17062715 |
T |
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