View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17981_low_18 (Length: 242)
Name: NF17981_low_18
Description: NF17981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17981_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 33375281 - 33375492
Alignment:
| Q |
15 |
attcagttttgggtttgaatcttccattgtcttaacattagtgagattctgatatgaaatggttgaaagatagtagtaactttcaccttgtttgatcaag |
114 |
Q |
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| T |
33375281 |
attcagattagggtttgaatcttccactgtctgccaattagtgagattctgatacgaaatggtcgaaagataatagtaactttcactttctttgattaag |
33375380 |
T |
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| Q |
115 |
tgtgagatatcggcaacagggtagtttccatttccactgcagccacaagttattggtaccagcaaaagttgaccttgaatgaggttcatattttcatctt |
214 |
Q |
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| T |
33375381 |
tgtgagatattggcaaaagagtagtttccatttccattgcaaccacaagttataggtataagcaaaagttggccatgaatgaggttcatattttcatctt |
33375480 |
T |
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| Q |
215 |
ttatgttgcttg |
226 |
Q |
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|||||||||||| |
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| T |
33375481 |
ttatgttgcttg |
33375492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 33383716 - 33383854
Alignment:
| Q |
84 |
atagtagtaactttcaccttgtttgatcaagtgtgagatatcggcaacagggtagtttccatttccactgcagccacaagttattggtaccagcaaaagt |
183 |
Q |
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| T |
33383716 |
atagtagtaactttcaccttgtttgatcaactgtgagatattggcaacagagtagtttccatttccactgcagccacaagttattggtaccagcaaaagt |
33383815 |
T |
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| Q |
184 |
tgaccttgaatgaggttcatattttcatcttttatgttg |
222 |
Q |
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| T |
33383816 |
tcgccatgaatgaggttcatattttcatcttttatgttg |
33383854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 33389776 - 33389919
Alignment:
| Q |
83 |
gatagtagtaactttcaccttgtttgatcaagtgtgagatatcggcaacagggtagtttccatttccactgcagccacaagttattggtaccagcaaaag |
182 |
Q |
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| T |
33389776 |
gatagtagtaactttcaccttgtttgatcaagtgtgagatattggcaaaaaagtagtttccattttcactgcaaccacaagttacatgtaccagcaaagg |
33389875 |
T |
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| Q |
183 |
ttgaccttgaatgaggttcatattttcatcttttatgttgcttg |
226 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
33389876 |
ttggtcttcaatgaggttcatattttcatcttttatgttgcttg |
33389919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 33382501 - 33382574
Alignment:
| Q |
15 |
attcagttttgggtttgaatcttccattgtcttaacattagtgagattctgatatgaaatggttgaaagatagt |
88 |
Q |
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| T |
33382501 |
attcagttttgggtttgaatcttccactgtcttaacattagtgagattctgatatgaaatggttgaaagatagt |
33382574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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