View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17981_low_19 (Length: 238)

Name: NF17981_low_19
Description: NF17981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17981_low_19
NF17981_low_19
[»] chr2 (4 HSPs)
chr2 (76-199)||(8019760-8019883)
chr2 (1-76)||(8019915-8019990)
chr2 (100-199)||(22391113-22391209)
chr2 (35-75)||(22391284-22391324)
[»] chr3 (40 HSPs)
chr3 (5-75)||(28081898-28081968)
chr3 (11-75)||(28132105-28132169)
chr3 (1-75)||(27392258-27392332)
chr3 (3-75)||(28183922-28183994)
chr3 (1-75)||(17746195-17746269)
chr3 (1-75)||(19047515-19047589)
chr3 (1-75)||(28159358-28159432)
chr3 (11-75)||(28002333-28002397)
chr3 (1-75)||(12146179-12146253)
chr3 (5-75)||(28147889-28147959)
chr3 (5-75)||(28510701-28510771)
chr3 (3-75)||(27918527-27918599)
chr3 (100-164)||(28081765-28081826)
chr3 (101-200)||(27918358-27918454)
chr3 (11-75)||(27461078-27461142)
chr3 (1-75)||(11418886-11418960)
chr3 (33-75)||(18026524-18026566)
chr3 (5-75)||(26115012-26115082)
chr3 (14-75)||(27347569-27347630)
chr3 (100-170)||(18026641-18026708)
chr3 (35-75)||(27376362-27376402)
chr3 (11-75)||(28481535-28481599)
chr3 (100-173)||(28147744-28147814)
chr3 (1-75)||(26142320-26142394)
chr3 (5-75)||(26210120-26210190)
chr3 (100-172)||(28131961-28132030)
chr3 (25-75)||(28481909-28481959)
chr3 (42-75)||(28035583-28035616)
chr3 (35-75)||(27975507-27975547)
chr3 (100-173)||(17746344-17746414)
chr3 (100-173)||(19047664-19047734)
chr3 (107-164)||(26180769-26180823)
chr3 (100-173)||(27461214-27461284)
chr3 (100-173)||(27975362-27975432)
chr3 (1-75)||(26131588-26131662)
chr3 (1-75)||(26180625-26180699)
chr3 (109-164)||(26210262-26210314)
chr3 (5-70)||(26237364-26237429)
chr3 (109-164)||(26237506-26237558)
chr3 (100-170)||(11418747-11418814)
[»] scaffold0043 (2 HSPs)
scaffold0043 (1-80)||(54749-54828)
scaffold0043 (109-194)||(54907-54989)
[»] chr7 (2 HSPs)
chr7 (3-75)||(8693360-8693432)
chr7 (109-199)||(8693519-8693606)
[»] scaffold0257 (1 HSPs)
scaffold0257 (1-75)||(17484-17558)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 8019883 - 8019760
Alignment:
Q  76 gttcctagctttggaaagcatgtttttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatct 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8019883 gttcctagctttggaaagcatgtttttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattctttgattctcatct 8019784  T
Q  176 taagtaagtgaggtagacatctta 199  Q
    ||||||||||||||||||||||||    
T  8019783 taagtaagtgaggtagacatctta 8019760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8019990 - 8019915
Alignment:
Q  1 ctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacatg 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019990 ctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacatg 8019915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 22391209 - 22391113
Alignment:
Q  100 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatcttaagtaagtgaggtagacatctta 199  Q
    |||||||||||||||| |||||||||||||   |||||||||| ||| || |||||||||||||| |||||||| | ||| || || |||||||| ||||    
T  22391209 tttgaggattttttattctccaaatcatct---tcaataatatgcttcaattctttgcattcttcaattctcatatcaagcaactgtggtagacacctta 22391113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 22391324 - 22391284
Alignment:
Q  35 tagctcaggaagctctttacatatggagattggaaagacat 75  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22391324 tagctcaggaagctctttacatatggagattggaaagacat 22391284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 28081968 - 28081898
Alignment:
Q  5 ctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  28081968 ctcatctgcttctcttatgatcagataatttagctcaggaagctctttatatacggagattggaaagacat 28081898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 28132169 - 28132105
Alignment:
Q  11 tgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  28132169 tgcttctcttatgatcagataatatagctcaggaagctctttacatacggagattggaaagacat 28132105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 27392258 - 27392332
Alignment:
Q  1 ctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| ||||    
T  27392258 ctagctcatctgcttctcttatgatcagaacctttagctcaggaagctctttacatatggagattggaaacacat 27392332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 28183994 - 28183922
Alignment:
Q  3 agctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||| |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  28183994 agctcatctgcttctcttatcatcagaacatttagctcaggaagctctttacatatggagattggaaacacat 28183922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17746195 - 17746269
Alignment:
Q  1 ctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    |||||||||||||||||||||| || |||   | |||||||||||||||||||||||||||||||||||||||||    
T  17746195 ctagctcatatgcttctcttatcattagaccctctagctcaggaagctctttacatatggagattggaaagacat 17746269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 19047515 - 19047589
Alignment:
Q  1 ctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    |||||||||||||||||||||| || |||   | |||||||||||||||||||||||||||||||||||||||||    
T  19047515 ctagctcatatgcttctcttatcattagaccctctagctcaggaagctctttacatatggagattggaaagacat 19047589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 28159432 - 28159358
Alignment:
Q  1 ctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||| || ||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  28159432 ctagctcatctgattctcttatcatcagaacatttagctcaggaagctctttacatatggagattggaaatacat 28159358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 28002397 - 28002333
Alignment:
Q  11 tgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  28002397 tgcttctcttatggtcagaacatttagctcaggaagctctttacatatggagattggaaacacat 28002333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12146253 - 12146179
Alignment:
Q  1 ctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||| |||||||||||| || ||| | | |||||||||||||||||||||||||||||||||||| ||||    
T  12146253 ctagctcatttgcttctcttataattagaaactgtagctcaggaagctctttacatatggagattggaaacacat 12146179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 28147959 - 28147889
Alignment:
Q  5 ctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||| |||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||| ||||    
T  28147959 ctcatctgcttctcttatgatcagaacctttagctcaggaagctctttagatatggagattggaaacacat 28147889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 28510701 - 28510771
Alignment:
Q  5 ctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||| |||||||||||||||||||  | ||||||| |||||||||||| |||||||||||||||||||||    
T  28510701 ctcatctgcttctcttatgatcagaacaattagctctggaagctctttagatatggagattggaaagacat 28510771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 27918599 - 27918527
Alignment:
Q  3 agctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||| |||||||||||| |  ||| | |||||||||||||| ||||||||||||||||||||||||||||    
T  27918599 agctcatctgcttctcttatcactagacactttagctcaggaaggtctttacatatggagattggaaagacat 27918527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 28081826 - 28081765
Alignment:
Q  100 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttc 164  Q
    |||||||||||||||| |||||||||||||   |||||||||| |||||||||||||||||||||    
T  28081826 tttgaggattttttattctccaaatcatct---tcaataatatgctttaactctttgcattcttc 28081765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 27918454 - 27918358
Alignment:
Q  101 ttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatcttaagtaagtgaggtagacatcttaa 200  Q
    ||||||||||||||| |||||||||||||   |||||||||| ||| ||||||||||||||||| ||||| || | ||| || || || |||||||||||    
T  27918454 ttgaggattttttattctccaaatcatct---tcaataatatacttcaactctttgcattcttcaattcttatatgaagcaactgcggcagacatcttaa 27918358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 27461078 - 27461142
Alignment:
Q  11 tgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||||||||| |||   | ||||||||||||||||||||||||||| |||||||||||||    
T  27461078 tgcttctcttatgattagaacctctagctcaggaagctctttacatatggacattggaaagacat 27461142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 11418960 - 11418886
Alignment:
Q  1 ctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||| ||| |||||||| ||||||  || ||||||||||||||||||||| | |||||||||||| ||||    
T  11418960 ctagctcatctgcgtctcttatcatcagaacatatagctcaggaagctctttacacagggagattggaaaaacat 11418886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 18026524 - 18026566
Alignment:
Q  33 tttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  18026524 tttagctcaggaagctctttatatatggagattggaaagacat 18026566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 26115012 - 26115082
Alignment:
Q  5 ctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||| |||||||||||| |||| |   ||||||||||||||||||||||| ||||||| |||||||||||    
T  26115012 ctcatttgcttctcttattatcataacctttagctcaggaagctctttacaaatggagactggaaagacat 26115082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 27347630 - 27347569
Alignment:
Q  14 ttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    |||||||||||| |||   | |||||||||||||||||||||||||||||||||||| ||||    
T  27347630 ttctcttatgattagagcctctagctcaggaagctctttacatatggagattggaaacacat 27347569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 18026641 - 18026708
Alignment:
Q  100 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattct 170  Q
    |||||||||||||||| ||||||||||||   ||||||||||| ||| ||||||||||| ||||| |||||    
T  18026641 tttgaggattttttattctccaaatcatc---ttcaataatatgcttcaactctttgcaatcttcaattct 18026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 27376402 - 27376362
Alignment:
Q  35 tagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  27376402 tagctcaggaagctcttcacatatggagattggaaagacat 27376362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 28481535 - 28481599
Alignment:
Q  11 tgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||||||||| |||  ||||||||  |||||||||||| |||||||||||||||| ||||    
T  28481535 tgcttctcttatgatgagaacatttagctttggaagctctttagatatggagattggaaacacat 28481599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 28147814 - 28147744
Alignment:
Q  100 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 173  Q
    |||||||||||||||| ||||||||||||   ||||||||||| | | ||||| ||||||||||| ||||||||    
T  28147814 tttgaggattttttattctccaaatcatc---ttcaataatatgcctcaactcattgcattcttcaattctcat 28147744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 26142320 - 26142394
Alignment:
Q  1 ctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||| |||||||||||| | || |   ||||||| ||||| ||||||||| |||||||||||||||||||    
T  26142320 ctagctcatttgcttctcttatcaacacagcctttagcttaggaaactctttacaaatggagattggaaagacat 26142394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 26210120 - 26210190
Alignment:
Q  5 ctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||| |||||||||||| |||| |  |||||||||||||| ||||||||| ||||||| |||||| ||||    
T  26210120 ctcatttgcttctcttattatcataacatttagctcaggaaactctttacaaatggagactggaaacacat 26210190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 28132030 - 28131961
Alignment:
Q  100 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctca 172  Q
    |||||||||||||||| ||||||||||||   |||||| |||| ||| || |||||||||||||| |||||||    
T  28132030 tttgaggattttttattctccaaatcatc---ttcaattatatgcttcaattctttgcattcttcaattctca 28131961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 28481909 - 28481959
Alignment:
Q  25 tcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    |||||| || |||||||||||| ||||||||||||||||||||||| ||||    
T  28481909 tcagatcatatagctcaggaaggtctttacatatggagattggaaacacat 28481959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 28035616 - 28035583
Alignment:
Q  42 ggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||||||||||||||||||||||||||||    
T  28035616 ggaagctctttacatatggagattggaaagacat 28035583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 27975547 - 27975507
Alignment:
Q  35 tagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  27975547 tagctcaagaagctctttacatatggagattggaaacacat 27975507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 17746344 - 17746414
Alignment:
Q  100 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 173  Q
    |||||||||||||||| |||||||||||||   |||| |||||   | ||||||||||||||||| ||||||||    
T  17746344 tttgaggattttttattctccaaatcatct---tcaaaaatatgtgtcaactctttgcattcttcaattctcat 17746414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 19047664 - 19047734
Alignment:
Q  100 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 173  Q
    |||||||||||||||| |||||||||||||   |||| |||||   | ||||||||||||||||| ||||||||    
T  19047664 tttgaggattttttattctccaaatcatct---tcaaaaatatgtgtcaactctttgcattcttcaattctcat 19047734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 26180769 - 26180823
Alignment:
Q  107 attttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttc 164  Q
    ||||||||||||||||||||||   |||||| |||| ||| |||||||||||||||||    
T  26180769 attttttatcctccaaatcatc---ttcaatgatatgcttcaactctttgcattcttc 26180823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 27461214 - 27461284
Alignment:
Q  100 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 173  Q
    |||||||| ||||| | |||||||||||   ||||||| |||| ||| ||||||||||||||||| ||||||||    
T  27461214 tttgaggagtttttgttctccaaatcat---attcaattatatgcttcaactctttgcattcttcaattctcat 27461284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 27975432 - 27975362
Alignment:
Q  100 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 173  Q
    |||||||||||| ||| |||||||||||   ||||||| |||| ||| ||||||||||| ||||| ||||||||    
T  27975432 tttgaggattttctattctccaaatcat---attcaattatatgcttcaactctttgcactcttcaattctcat 27975362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 26131588 - 26131662
Alignment:
Q  1 ctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||| |||||| ||||| |||| |   ||||||| ||||| ||||||||| ||||||| |||||||||||    
T  26131588 ctagctcatttgcttcacttatcatcataacctttagcttaggaaactctttacaaatggagactggaaagacat 26131662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 26180625 - 26180699
Alignment:
Q  1 ctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||| |||||||||||| | || |   ||||||||||||| ||||||||| ||||||| |||||| ||||    
T  26180625 ctagctcatttgcttctcttatcaacataacctttagctcaggaaactctttacaaatggagactggaaacacat 26180699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 26210262 - 26210314
Alignment:
Q  109 tttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttc 164  Q
    ||||||||||||||||||||   |||||| |||| ||| |||||||||||||||||    
T  26210262 tttttatcctccaaatcatc---ttcaatgatatgcttcaactctttgcattcttc 26210314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 26237364 - 26237429
Alignment:
Q  5 ctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaa 70  Q
    ||||| |||||||||||||| || |   ||||||||||||| ||||||||| ||||||| ||||||    
T  26237364 ctcatttgcttctcttatgaacataacctttagctcaggaaactctttacaaatggagactggaaa 26237429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 26237506 - 26237558
Alignment:
Q  109 tttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttc 164  Q
    ||||||||||||||||||||   |||||| |||| ||| |||||||||||||||||    
T  26237506 tttttatcctccaaatcatc---ttcaatgatatgcttcaactctttgcattcttc 26237558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 11418814 - 11418747
Alignment:
Q  100 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattct 170  Q
    |||||||| ||||||| |||||| ||||||   ||||| |||| ||| ||||||||||||||||| |||||    
T  11418814 tttgaggaatttttattctccaagtcatct---tcaatcatatgcttcaactctttgcattcttcaattct 11418747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 54749 - 54828
Alignment:
Q  1 ctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacatgttcc 80  Q
    ||||||||| ||||||||||||||| |||  || ||||||||||||||||||||||||||||||||||||||||| ||||    
T  54749 ctagctcatgtgcttctcttatgattagagcatctagctcaggaagctctttacatatggagattggaaagacattttcc 54828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 54907 - 54989
Alignment:
Q  109 tttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatcttaagtaagtgaggtagaca 194  Q
    ||||||| |||||||||||||   ||||| |||| ||| ||||||||||||||||| ||||| || | ||| || |||||||||||    
T  54907 tttttattctccaaatcatct---tcaatcatatgcttcaactctttgcattcttcaattcttatatgaagcaactgaggtagaca 54989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 8693360 - 8693432
Alignment:
Q  3 agctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||| |||||||||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||    
T  8693360 agctcatctgcttctcttatgatcagaacatttagctcaggaagctcgttacatatggagactggaaagacat 8693432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 8693519 - 8693606
Alignment:
Q  109 tttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatcttaagtaagtgaggtagacatctta 199  Q
    ||||||| |||||||||||||   |||||||||| ||| ||||||||||||||||| |||||||| | ||| || || |||||||| ||||    
T  8693519 tttttattctccaaatcatct---tcaataatatgcttcaactctttgcattcttcaattctcatataaagcaactgtggtagacacctta 8693606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 17558 - 17484
Alignment:
Q  1 ctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 75  Q
    ||||||||| |||||||||||| |  ||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  17558 ctagctcatctgcttctcttatcactagacactttagctcaggaagctctttacatatggagattggaaacacat 17484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University