View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17981_low_2 (Length: 582)
Name: NF17981_low_2
Description: NF17981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17981_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 149 - 572
Target Start/End: Original strand, 2019988 - 2020416
Alignment:
| Q |
149 |
gcttgctttaagtgtgaactctgaaaaccagtcaccaacttaccccttccgctccaacaacactcgatcttcttcattttcttctaattgaattgtgcat |
248 |
Q |
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| T |
2019988 |
gcttgctttaagtgtgaactctgaaaaccagtcaccaacttaccccttccgctccaacaacactcgatcttcttcattttcttctaattgaattgtgcat |
2020087 |
T |
|
| Q |
249 |
tttgcaaagtacttctcatccaagatttcaaaaattgcgatcgatcggatcagaatgtttcatggaattagggtttcgatgatgtccttcactatcaaaa |
348 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2020088 |
tttgcaaagtacttctcatccaagatttcaaacattgcgatcgatcggatcagaatgtttcatggaatttgggtttcgatgatgtccttcactatcaaaa |
2020187 |
T |
|
| Q |
349 |
ccctactaacttgaaaagttccgattccgagagaaaagaactgagtcgacacagcgagttaaaaacgacgtcgcttttgcgttgcatcaagttgacgacg |
448 |
Q |
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| T |
2020188 |
ccctactaacttgaaaagttccgattccgagagaaaagaactgagtcgacacagtgagtgaaaaacgacgtcgcttttgcggtgcatcaagttgacgacg |
2020287 |
T |
|
| Q |
449 |
gcaatgt-----ataaataaggattgagactgagaatgtaaaattttannnnnnnaacggacaaagtaaaattaattactactccctttctaatatattt |
543 |
Q |
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| T |
2020288 |
gcaatgtatataataaataaggattgagactgagaatgtaaaattttatttttttaacggacaaagtaaaattaattactactccctttctaatatattt |
2020387 |
T |
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| Q |
544 |
ttgaaagaccctttctaatattcttggac |
572 |
Q |
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| T |
2020388 |
ttgaaagaccctttctaatattgttggac |
2020416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 151 - 444
Target Start/End: Complemental strand, 1947291 - 1946984
Alignment:
| Q |
151 |
ttgctttaagtgtgaactctgaaaaccagtcaccaacttaccccttccgctccaacaacactcgatcttcttcattttcttctaattgaattgtgcattt |
250 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
1947291 |
ttgctttaagtgtgaattcttaaaaccagtcaccaacttaccccttccactccaacaacactcgatcttcttc---ttcttctgattgaattgtgcattt |
1947195 |
T |
|
| Q |
251 |
tgcaaagtacttctcatccaagatttcaa---------------aaattgcgatcgatcggatcagaatgtttcatggaattagggtttcgatgatgtcc |
335 |
Q |
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| T |
1947194 |
tgcaaagtacttctcatcgaagatttcaaactttcgccattgatacatcgtgatcgatcggatcggaatgtttcatgaaattagggtttcgatgatgtcc |
1947095 |
T |
|
| Q |
336 |
ttca---ctatcaaaaccctactaacttgaaaagttccgattccgagagaaaagaactgagtcgacacagcgagttaaaaacgacgtcgcttttgcgttg |
432 |
Q |
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| T |
1947094 |
ttcacctccatccaaaccctaatttcttgaaaa-atctgatttcgaaagaaaagtaccgagtcgatacagtgagtgagaaacaacgtcgcttttgtattt |
1946996 |
T |
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| Q |
433 |
catcaagttgac |
444 |
Q |
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|||||||||||| |
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| T |
1946995 |
catcaagttgac |
1946984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 2019874 - 2019958
Alignment:
| Q |
7 |
gattatccgttataagttaatttatcagttatccaaacagagcctaagccaaattttcaaccacttgataaaaatagcaaccaat |
91 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2019874 |
gattatccgttataaattaatttattagttatccaaacagagcctaagccaaatttgcaaccacttgataaaaatagcaaccaat |
2019958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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