View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17981_low_20 (Length: 238)
Name: NF17981_low_20
Description: NF17981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17981_low_20 |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: scaffold0199 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8015 - 7795
Alignment:
| Q |
1 |
tttgtagattgtttattttctgcttagaaatcatttattttttccgtataacttgaaagctttaagattttgggtggtcacgctaaatttttaaacttaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8015 |
tttgtagattgtttattttctgctaagaaatcatttattttttccgtataacttgaaagctttaagattttgggtggtcacactaaatttttaaacttaa |
7916 |
T |
|
| Q |
101 |
ctgtaacaaaatctctgaaacagtgtcttctagaccttactgtttgatttcaagttttcactttgcatatgatatttgtgaaatttattttaaatttgtg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915 |
ctataacaaaatctctgaaacagtgtcttctagaccttactgtttgatttcaagttttcactttgcatatgatatttgtgaaatttattttaaatttgtg |
7816 |
T |
|
| Q |
201 |
gagccaaaatggtctggatgg |
221 |
Q |
| |
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|||||||||||||||||||| |
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| T |
7815 |
tagccaaaatggtctggatgg |
7795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1670128 - 1669907
Alignment:
| Q |
1 |
tttgtagattgtttattttctgcttagaaatcatttattttttccgtataacttgaaagctttaagatttt-gggtggtcacgctaaatttttaaactta |
99 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | |
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| T |
1670128 |
tttgtagattgtttattttctgctaagaaatcatttattttttccgtataacttgaaagctttaagatttttgggtggtcacgctaaacttttaaactca |
1670029 |
T |
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| Q |
100 |
actgtaacaaaatctctgaaacagtgtcttctagaccttactgtttgatttcaagttttcactttgcatatgatatttgtgaaatttattttaaatttgt |
199 |
Q |
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| T |
1670028 |
agtgtaacaaaatctctgaaacagtgtcttctagaccttactgtttgatttcaagttttcactttgcatatgatatttgtgaaatttattttaaatttgt |
1669929 |
T |
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| Q |
200 |
ggagccaaaatggtctggatgg |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
1669928 |
ggagccaaaatggtctggatgg |
1669907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 1888362 - 1888487
Alignment:
| Q |
4 |
gtagattgtttattttctgcttagaaatcatttattttttccgtataacttgaaagctttaagattttgggtggtcacgctaaatttttaaacttaactg |
103 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
1888362 |
gtagattgtttattttctgctaagaaatcatttattttttccgtataacttgaaagctttaagattttgggtgggcacactaaatttttaaacttaactg |
1888461 |
T |
|
| Q |
104 |
taacaaaatctctgaaacagtgtctt |
129 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1888462 |
taacaaaatctctgaaacagtgtctt |
1888487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 1891573 - 1891674
Alignment:
| Q |
1 |
tttgtagattgtttattttctgcttagaaatcatttattttttccgtataacttgaaagctttaagattttgggtggtcacgctaaatttttaaacttaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
1891573 |
tttgtagattgtttattttctgctaagaaatcatttattttttctgtataacttaaaagctttgagattttgggtggtcacactaaatttttaaacttaa |
1891672 |
T |
|
| Q |
101 |
ct |
102 |
Q |
| |
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|| |
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|
| T |
1891673 |
ct |
1891674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5997189 - 5997407
Alignment:
| Q |
1 |
tttgtagattgtttattttctgcttagaaatcatttattttttccgtataacttgaaagctttaagattttgggtggtcacgctaaatttttaaacttaa |
100 |
Q |
| |
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||||||||||||||||| |||||| ||||||||||| ||||| |||||||| |||||| ||||||||||||||||| |||||||||||||||| | |
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| T |
5997189 |
tttgtagattgtttattgtctgctatgaaatcatttacttttttggtataactgcgcagctttgagattttgggtggtcacactaaatttttaaacttga |
5997288 |
T |
|
| Q |
101 |
ctgtaacaaaatctctgaaacagtgtcttctagaccttactgtttgatttcaagttttcactttgcatatgatatttgtgaaatttattttaaatttgtg |
200 |
Q |
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|||||| ||||| |||||||| ||||||||||||||||||| ||||| ||| |||||||||||||| |||||| ||||||||||||||||| |||||||| |
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| T |
5997289 |
ctgtaaaaaaat-tctgaaacggtgtcttctagaccttactctttgaattccagttttcactttgcgtatgatttttgtgaaatttatttt-aatttgtg |
5997386 |
T |
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| Q |
201 |
gagccaaaatggtctggatgg |
221 |
Q |
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||||||||||| ||||||||| |
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| T |
5997387 |
gagccaaaatgttctggatgg |
5997407 |
T |
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