View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17981_low_21 (Length: 225)

Name: NF17981_low_21
Description: NF17981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17981_low_21
NF17981_low_21
[»] chr8 (3 HSPs)
chr8 (18-208)||(8578571-8578761)
chr8 (161-207)||(6509328-6509374)
chr8 (148-209)||(8603649-8603710)
[»] chr3 (4 HSPs)
chr3 (148-199)||(44284092-44284143)
chr3 (148-197)||(53848075-53848124)
chr3 (161-205)||(24158528-24158572)
chr3 (133-201)||(30923895-30923963)
[»] chr6 (1 HSPs)
chr6 (162-207)||(33067157-33067202)
[»] chr7 (2 HSPs)
chr7 (147-207)||(514766-514826)
chr7 (136-204)||(39505958-39506026)
[»] chr5 (3 HSPs)
chr5 (160-204)||(40205098-40205142)
chr5 (160-206)||(28409389-28409435)
chr5 (133-206)||(4855698-4855771)
[»] chr2 (4 HSPs)
chr2 (160-199)||(43591534-43591573)
chr2 (161-207)||(9878707-9878753)
chr2 (135-207)||(39983341-39983413)
chr2 (161-209)||(42826384-42826432)
[»] chr4 (2 HSPs)
chr4 (152-206)||(3175951-3176005)
chr4 (160-205)||(29263371-29263416)
[»] scaffold0020 (1 HSPs)
scaffold0020 (133-206)||(159970-160043)
[»] chr1 (1 HSPs)
chr1 (160-197)||(4699639-4699676)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 8578761 - 8578571
Alignment:
Q  18 ataacctataaacacaacatagggagataaaattgttagcattcaaattcattgatccaaactacaaaaccaattctgcctagtactgcagattgcttag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8578761 ataacctataaacacaacatagggagataaaattgttagcattcaaattcattgatccaaactacaaaaccaattctgcccagtactgcagattgcttag 8578662  T
Q  118 ctatatnnnnnnncattatgacatgtcttgaagctatttccggcttatttctacaagctctccgggatagcttatgaaaacaccttatagt 208  Q
    ||||||       ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8578661 ctatataaaaaaacattatgacatgtctagaagctattttcggcttatttctacaagctctccgggatagcttatgaaaacagcttatagt 8578571  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 6509328 - 6509374
Alignment:
Q  161 cttatttctacaagctctccgggatagcttatgaaaacaccttatag 207  Q
    |||||||| | ||||||||| |||||||||||||||||| |||||||    
T  6509328 cttatttcaataagctctccaggatagcttatgaaaacagcttatag 6509374  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 8603710 - 8603649
Alignment:
Q  148 aagctatttccggcttatttctacaagctctccgggatagcttatgaaaacaccttatagtt 209  Q
    ||||||||| | ||| ||||||||||||||||| ||||| |||||| ||| | |||||||||    
T  8603710 aagctattttccgctcatttctacaagctctccaggataacttatgcaaatagcttatagtt 8603649  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 44284092 - 44284143
Alignment:
Q  148 aagctatttccggcttatttctacaagctctccgggatagcttatgaaaaca 199  Q
    ||||||||| | ||||||||||| ||||||||| ||||||||||||||||||    
T  44284092 aagctattttcagcttatttctataagctctccaggatagcttatgaaaaca 44284143  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 53848075 - 53848124
Alignment:
Q  148 aagctatttccggcttatttctacaagctctccgggatagcttatgaaaa 197  Q
    ||||| ||| ||||||||||||| |||||||| ||||||| |||||||||    
T  53848075 aagctgttttcggcttatttctataagctctctgggatagtttatgaaaa 53848124  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 24158528 - 24158572
Alignment:
Q  161 cttatttctacaagctctccgggatagcttatgaaaacaccttat 205  Q
    |||||||| | ||||||||| |||||||||||||||||| |||||    
T  24158528 cttatttccataagctctccaggatagcttatgaaaacagcttat 24158572  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 30923895 - 30923963
Alignment:
Q  133 ttatgacatgtcttgaagctatttccggcttatttctacaagctctccgggatagcttatgaaaacacc 201  Q
    |||||||||||||  ||||| ||| | ||||||||||| || |||||  |||||| |||||||||||||    
T  30923895 ttatgacatgtctataagctgttttcagcttatttctataaactctctaggataggttatgaaaacacc 30923963  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 33067202 - 33067157
Alignment:
Q  162 ttatttctacaagctctccgggatagcttatgaaaacaccttatag 207  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||    
T  33067202 ttatttctacaagctctccaagatagcttatgaaaacaacttatag 33067157  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 514826 - 514766
Alignment:
Q  147 gaagctatttccggcttatttctacaagctctccgggatagcttatgaaaacaccttatag 207  Q
    |||| ||||| | ||||||||  ||||||||||| |||||||||||||||||| |||||||    
T  514826 gaagttattttcagcttattttgacaagctctccaggatagcttatgaaaacagcttatag 514766  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 39506026 - 39505958
Alignment:
Q  136 tgacatgtcttgaagctatttccggcttatttctacaagctctccgggatagcttatgaaaacacctta 204  Q
    |||||||||| |||||||||| | ||||||||| | || |||||| | |||||||||||||||| ||||    
T  39506026 tgacatgtctggaagctattttcagcttatttccataaactctccagaatagcttatgaaaacaactta 39505958  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 40205098 - 40205142
Alignment:
Q  160 gcttatttctacaagctctccgggatagcttatgaaaacacctta 204  Q
    ||||||||||| ||||||||| |||||||||||||||||| ||||    
T  40205098 gcttatttctataagctctccaggatagcttatgaaaacaactta 40205142  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 28409389 - 28409435
Alignment:
Q  160 gcttatttctacaagctctccgggatagcttatgaaaacaccttata 206  Q
    ||||||||||||||| ||||||||||||||||| |||| | ||||||    
T  28409389 gcttatttctacaagttctccgggatagcttataaaaatagcttata 28409435  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 4855771 - 4855698
Alignment:
Q  133 ttatgacatgtcttgaagctatttccggcttatttctacaagctctccgggatagcttatgaaaacaccttata 206  Q
    |||||||||||   |||||| ||| ||||||||||||  |||||||  ||||||| ||||||||||| ||||||    
T  4855771 ttatgacatgttcagaagctgttttcggcttatttctgtaagctctttgggatagtttatgaaaacaacttata 4855698  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 43591534 - 43591573
Alignment:
Q  160 gcttatttctacaagctctccgggatagcttatgaaaaca 199  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  43591534 gcttatttccacaagctcttcgggatagcttatgaaaaca 43591573  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 9878707 - 9878753
Alignment:
Q  161 cttatttctacaagctctccgggatagcttatgaaaacaccttatag 207  Q
    ||||||||| ||||||||||||||||||  ||||||||| |||||||    
T  9878707 cttatttcttcaagctctccgggatagcgaatgaaaacaacttatag 9878753  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 39983413 - 39983341
Alignment:
Q  135 atgacatgtcttgaagctatttccggcttatttctacaagctctccgggatagcttatgaaaacaccttatag 207  Q
    |||||||||||  ||||||||| | | ||||||  |  |||||||| |||||||||||||||||| |||||||    
T  39983413 atgacatgtctataagctattttcagtttattttcattagctctccaggatagcttatgaaaacaacttatag 39983341  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 42826432 - 42826384
Alignment:
Q  161 cttatttctacaagctctccgggatagcttatgaaaacaccttatagtt 209  Q
    |||||||| | ||||||||||||||||||| |||||| | |||||||||    
T  42826432 cttatttcaataagctctccgggatagcttgtgaaaatagcttatagtt 42826384  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 3176005 - 3175951
Alignment:
Q  152 tatttccggcttatttctacaagctctccgggatagcttatgaaaacaccttata 206  Q
    ||||| || ||||||||||||||| || | |||||||||||||||||| ||||||    
T  3176005 tattttcgacttatttctacaagcccttcaggatagcttatgaaaacagcttata 3175951  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 29263416 - 29263371
Alignment:
Q  160 gcttatttctacaagctctccgggatagcttatgaaaacaccttat 205  Q
    ||||||||| ||||||||| | |||||||||||||||||| |||||    
T  29263416 gcttatttccacaagctctgcaggatagcttatgaaaacaacttat 29263371  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 159970 - 160043
Alignment:
Q  133 ttatgacatgtcttgaagctatttccggcttatttctacaagctctccgggatagcttatgaaaacaccttata 206  Q
    |||||||||||||  ||||  ||| | ||||||||| |||||||||   |||||||||||||||||| ||||||    
T  159970 ttatgacatgtctataagcagttttcagcttatttccacaagctctttaggatagcttatgaaaacatcttata 160043  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 4699639 - 4699676
Alignment:
Q  160 gcttatttctacaagctctccgggatagcttatgaaaa 197  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  4699639 gcttatttctataagctctccgggatagtttatgaaaa 4699676  T

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