View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17981_low_6 (Length: 456)
Name: NF17981_low_6
Description: NF17981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17981_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 21 - 383
Target Start/End: Original strand, 29305623 - 29305974
Alignment:
| Q |
21 |
aatagcgaatcataatctaatataccataccgtgtgtggatgtcaatccatgccttttgaagcttgaatatagtcaaataaccttgttatttgaatccta |
120 |
Q |
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| T |
29305623 |
aatagtgaatcataatctaatatac-----cgtgtgtggatgtcaatacatgccttttgaagcttcaatatagtcaaataaccttgttatttgaatccta |
29305717 |
T |
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| Q |
121 |
tattatataatgattatggtaattaccaagtaaaaatcatgcaattattatgtgactaaaaatttcactttagacaccagaaagtgctacagttctattc |
220 |
Q |
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| T |
29305718 |
tatcatataatgattatggtaattaccaagtaaaaatcatgcaattattatgtgactaaaaatttcactttagacaccagaaagtgctacagttctattc |
29305817 |
T |
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| Q |
221 |
ctttgtgccaacctcttatgttattatgctttgtttggaccagacaattcaataaaagaagccaaacattgtcaagaacttgtaactaccaccaaaccaa |
320 |
Q |
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| T |
29305818 |
ctttgtgccaacctcttatgttattatgctttg-ttggaccagacaattcaataaaagaagccaaacattgtcaagaacttgtaactacc-----accaa |
29305911 |
T |
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| Q |
321 |
agtgatcaaatacaaaaagagtcttattatttattatttataggactcttatcttataccctt |
383 |
Q |
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| T |
29305912 |
agtgatcaaatacaaaaagagtcttattatttattatttataggactcttatcttattccctt |
29305974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 134 - 354
Target Start/End: Original strand, 29297000 - 29297218
Alignment:
| Q |
134 |
ttatggtaattaccaagtaaaaatcatgcaattattatgtgactaaaa-atttcactttagacaccagaaagtgctacagttctattcctttgtgccaac |
232 |
Q |
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| T |
29297000 |
ttatggtaattaccaagtaaatataatgcaattattatgtgcctaaaataattcactgtacacaccagaaagtgccacagttctattcctttttgccaac |
29297099 |
T |
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| Q |
233 |
ctcttatgttattatgctttgtttggaccagacaattcaataaaagaagcca-------aacattgtcaagaacttgtaactaccaccaaaccaaagtga |
325 |
Q |
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| T |
29297100 |
ctcttatacta-tatgcttt-atgggaccatacaattgaataaaagatgccacaaagccaacatagtcaataacttgtaact--------accaaagtga |
29297189 |
T |
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| Q |
326 |
tcaaatacaaaaagagtcttattatttat |
354 |
Q |
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||||||||||||||| |||| |||||||| |
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| T |
29297190 |
tcaaatacaaaaagaatcttcttatttat |
29297218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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