View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17981_low_7 (Length: 444)
Name: NF17981_low_7
Description: NF17981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17981_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 5 - 428
Target Start/End: Complemental strand, 50508218 - 50507794
Alignment:
| Q |
5 |
tgtcgaagaatatgatactttggtgttagtgatcgatgtggacgcataaaacaatgacctgtttcaatttatttaaagtgtgtttgtgttatttccatct |
104 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50508218 |
tgtcgaaaattatgatactttggtgttagtgatcgatgtggacgcataaaacaatgacctgtttcaatttatttaaagtgtgtttgtgttatttccatct |
50508119 |
T |
|
| Q |
105 |
tccgcttt--cattcataatgtaagaaggtgattaaacatcaacaaccgcatgggaatgtattgaactatagctcggtcacacttttaaatgttgaaatg |
202 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
50508118 |
tccgctttatcattcataatgtaagaaggtgattcaacatcaacaaccgcatgggaatgtattgaactatagcttggtcacacttttaaatgctgaaatg |
50508019 |
T |
|
| Q |
203 |
aatgtgcttcaaaagaaatgttgaaatagtgctattgtaacaaaacttagtccaaaccctaaaaaactaaattgtattatttagacacacaaaacacgac |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50508018 |
aatgtgcttcaaaagaaatgttgaaatagtgctattgtaacaaaacttagtccaaaccctaaaaaactaaattgtattatttagacacacaaaacacgac |
50507919 |
T |
|
| Q |
303 |
attttaaattgtccaatattatatacaaaatacactcgatcaagtttgaatttcatcggacatgagagaaaataatgattaaaaaatacaaacgatggtt |
402 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
50507918 |
attttaaattgtccaatattatatataaaatacactcgatcaagtttgaatttcatcggacatgagagaaaataatgattaaaaaatacaaacgat-gtt |
50507820 |
T |
|
| Q |
403 |
ataaattgtgtttccagtttccatgt |
428 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
50507819 |
ataaattgtgtttccagtttccatgt |
50507794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University