View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17981_low_8 (Length: 382)

Name: NF17981_low_8
Description: NF17981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17981_low_8
NF17981_low_8
[»] chr1 (4 HSPs)
chr1 (217-371)||(52801637-52801791)
chr1 (55-94)||(48183914-48183953)
chr1 (54-96)||(26354696-26354739)
chr1 (146-179)||(52801798-52801831)
[»] chr7 (7 HSPs)
chr7 (55-127)||(44660056-44660128)
chr7 (53-96)||(25533962-25534005)
chr7 (54-96)||(21358377-21358419)
chr7 (11-52)||(12280071-12280112)
chr7 (54-147)||(12003283-12003377)
chr7 (54-147)||(21453133-21453227)
chr7 (254-293)||(12003135-12003174)
[»] chr8 (3 HSPs)
chr8 (53-130)||(43915827-43915902)
chr8 (254-293)||(34213059-34213098)
chr8 (53-96)||(1667822-1667867)
[»] chr5 (6 HSPs)
chr5 (54-130)||(43299937-43300014)
chr5 (53-96)||(3173849-3173893)
chr5 (54-96)||(18740038-18740081)
chr5 (53-96)||(21745035-21745080)
chr5 (53-96)||(42740890-42740935)
chr5 (54-96)||(32863333-32863377)
[»] chr4 (7 HSPs)
chr4 (67-166)||(33754247-33754345)
chr4 (11-52)||(11134927-11134968)
chr4 (11-52)||(23260127-23260168)
chr4 (54-96)||(14800360-14800404)
chr4 (61-96)||(47825599-47825634)
chr4 (11-52)||(23278025-23278066)
chr4 (11-52)||(27544051-27544092)
[»] chr2 (1 HSPs)
chr2 (54-96)||(25697957-25697998)
[»] scaffold0005 (1 HSPs)
scaffold0005 (54-96)||(39323-39367)
[»] chr6 (2 HSPs)
chr6 (254-293)||(14654743-14654782)
chr6 (54-96)||(16497562-16497606)
[»] chr3 (3 HSPs)
chr3 (53-96)||(2339181-2339226)
chr3 (67-96)||(2733346-2733375)
chr3 (54-96)||(52893141-52893185)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 217 - 371
Target Start/End: Complemental strand, 52801791 - 52801637
Alignment:
Q  217 ttctcccaacaacaaagcaaatcgagtccagacaacccaaccaccacactaccgccggccagccgccgcgaccactcacatgtcaccttcttctccatcc 316  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52801791 ttctcccaacaacaaagcaaatcgagtcaagacaacccaaccaccacaccaccgccggccagccgccgcgaccactcacatgtcaccttcttctccatcc 52801692  T
Q  317 atcacccgccgacgcatcctcctgacctcctccatcttctgtgttttctccatct 371  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  52801691 atcacccgccggcgcatcctcctgacctcctccatcttctgtgttatctccatct 52801637  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 48183914 - 48183953
Alignment:
Q  55 agtggcggaactggggtggcaagggggagccacagccacc 94  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  48183914 agtggcggaactggggtggcaagggggagccaccgccacc 48183953  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 26354696 - 26354739
Alignment:
Q  54 cagtggcggaactgg-ggtggcaagggggagccacagccacccc 96  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||    
T  26354696 cagtggcggaactggaggtggcaagggggagccaccgccacccc 26354739  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 52801831 - 52801798
Alignment:
Q  146 tcatattcaatctcatttggtcttgctgtttctc 179  Q
    |||||||||||||||||||||||||| |||||||    
T  52801831 tcatattcaatctcatttggtcttgccgtttctc 52801798  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 44660056 - 44660128
Alignment:
Q  55 agtggcggaactggggtggcaagggggagccacagccacccccattatttgctggaaattaccattataccct 127  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| | | | ||||||||| ||||||||||    
T  44660056 agtgccggaactggggtggcaagggggagccaccgccacccccattgtatacaggaaattacaattataccct 44660128  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 25533962 - 25534005
Alignment:
Q  53 gcagtggcggaactggggtggcaagggggagccacagccacccc 96  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  25533962 gcagtggcggaactggggtggcaagggggagccaccgccacccc 25534005  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 21358419 - 21358377
Alignment:
Q  54 cagtggcggaactggggtggcaagggggagccacagccacccc 96  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  21358419 cagtggcggaactggggtggtaagggggagccaccgccacccc 21358377  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 12280112 - 12280071
Alignment:
Q  11 cataggaagctcagaaggagacctagcatagtacgatccacc 52  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  12280112 cataggaagctcagaaggagaccaagcagagtacgatccacc 12280071  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 12003377 - 12003283
Alignment:
Q  54 cagtggcggaactgggg--tggcaagggggagccacagccacccccattatttgctggaaattaccattatacccttcattattattaatattttc 147  Q
    |||||||||||||||||  |||||||| |||||||| |||| ||||||  |||  |||||||||| ||||| ||||||||||  | ||||||||||    
T  12003377 cagtggcggaactggggggtggcaaggaggagccaccgcca-ccccatccttttatggaaattactattatgcccttcattaaaactaatattttc 12003283  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 21453227 - 21453133
Alignment:
Q  54 cagtggcggaactgggg--tggcaagggggagccacagccacccccattatttgctggaaattaccattatacccttcattattattaatattttc 147  Q
    |||||||||||||||||  ||||||||||||||||| |||| ||||||  |||  |||||||| | ||||| ||||||||||  | ||||||||||    
T  21453227 cagtggcggaactggggggtggcaagggggagccaccgcca-ccccatccttttatggaaattcctattatgcccttcattaaaactaatattttc 21453133  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 12003174 - 12003135
Alignment:
Q  254 caaccaccacactaccgccggccagccgccgcgaccactc 293  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  12003174 caaccaccacaccaccgccggtcagccgccgcgaccactc 12003135  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 43915827 - 43915902
Alignment:
Q  53 gcagtggcggaactggggtggcaagggggagccacagccacccccattatttgctggaaattaccattatacccttca 130  Q
    |||||||| ||||||||||||||||| |||||||| ||||  |||||||||| | ||||||||| |||||||||||||    
T  43915827 gcagtggctgaactggggtggcaaggaggagccaccgcca--cccattatttacaggaaattactattatacccttca 43915902  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 34213098 - 34213059
Alignment:
Q  254 caaccaccacactaccgccggccagccgccgcgaccactc 293  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  34213098 caaccaccacaccaccgccggtcagccgccgcgaccactc 34213059  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 1667822 - 1667867
Alignment:
Q  53 gcagtggcggaactgggg--tggcaagggggagccacagccacccc 96  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||    
T  1667822 gcagtggcggaactggggggtggcaagggggagccaccgccacccc 1667867  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 43299937 - 43300014
Alignment:
Q  54 cagtggcggaactggggt-ggcaagggggagccacagccacccccattatttgctggaaattaccattatacccttca 130  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||| | | |  |||||||| |||||||||||||    
T  43299937 cagtggcggaactggggttggcaagggggagccaccgccacccccattgtatacaagaaattactattatacccttca 43300014  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 3173849 - 3173893
Alignment:
Q  53 gcagtggcggaactgggg-tggcaagggggagccacagccacccc 96  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||    
T  3173849 gcagtggcggaactgggggtggcaagggggagccaccgccacccc 3173893  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 18740081 - 18740038
Alignment:
Q  54 cagtggcggaactggggt-ggcaagggggagccacagccacccc 96  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  18740081 cagtggcggaactggggttggcaagggggagccaccgccacccc 18740038  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 21745080 - 21745035
Alignment:
Q  53 gcagtggcggaactgggg--tggcaagggggagccacagccacccc 96  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||    
T  21745080 gcagtggcggaactggggggtggcaagggggagccaccgccacccc 21745035  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 42740935 - 42740890
Alignment:
Q  53 gcagtggcggaactgggg--tggcaagggggagccacagccacccc 96  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||    
T  42740935 gcagtggcggaactggggggtggcaagggggagccaccgccacccc 42740890  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 32863333 - 32863377
Alignment:
Q  54 cagtggcggaactgggg--tggcaagggggagccacagccacccc 96  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||    
T  32863333 cagtggcggaactggggggtggcaagggggagccaccgccacccc 32863377  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 33754345 - 33754247
Alignment:
Q  67 ggggtggcaagggggagccacagccacccccattatttgctggaaattaccattatacccttcattattattaatattttcatattcaatctcatttggt 166  Q
    ||||||||||||||||||||| |||||||| ||||  |  |||||||||| ||| |||||||||||| || ||||||||||   |||||| |||||||||    
T  33754345 ggggtggcaagggggagccaccgccacccc-attacatcatggaaattactattttacccttcattaatagtaatattttctatttcaatttcatttggt 33754247  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 11134968 - 11134927
Alignment:
Q  11 cataggaagctcagaaggagacctagcatagtacgatccacc 52  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  11134968 cataggaagctcagaaggagaccaagcatagtacgatccacc 11134927  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 23260127 - 23260168
Alignment:
Q  11 cataggaagctcagaaggagacctagcatagtacgatccacc 52  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  23260127 cataggaagctcagaaggagaccaagcatagtacgatccacc 23260168  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 14800404 - 14800360
Alignment:
Q  54 cagtggcggaact--ggggtggcaagggggagccacagccacccc 96  Q
    |||||||||||||  ||||||||||||||||||||||||||||||    
T  14800404 cagtggcggaactagggggtggcaagggggagccacagccacccc 14800360  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 47825599 - 47825634
Alignment:
Q  61 ggaactggggtggcaagggggagccacagccacccc 96  Q
    ||||||||||||||||||||||||||| ||||||||    
T  47825599 ggaactggggtggcaagggggagccaccgccacccc 47825634  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 23278025 - 23278066
Alignment:
Q  11 cataggaagctcagaaggagacctagcatagtacgatccacc 52  Q
    |||||||||||||||||| |||| ||| ||||||||||||||    
T  23278025 cataggaagctcagaaggtgaccaagcgtagtacgatccacc 23278066  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 27544051 - 27544092
Alignment:
Q  11 cataggaagctcagaaggagacctagcatagtacgatccacc 52  Q
    ||||||||| |||||||||||||  |||||||||||||||||    
T  27544051 cataggaagttcagaaggagaccatgcatagtacgatccacc 27544092  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 25697998 - 25697957
Alignment:
Q  54 cagtggcggaactggggtggcaagggggagccacagccacccc 96  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  25697998 cagtggcggaactggggtggcaagggggagccac-gccacccc 25697957  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 39323 - 39367
Alignment:
Q  54 cagtggcggaact--ggggtggcaagggggagccacagccacccc 96  Q
    |||||||||||||  ||||||||||||||||||||||||||||||    
T  39323 cagtggcggaactagggggtggcaagggggagccacagccacccc 39367  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 14654782 - 14654743
Alignment:
Q  254 caaccaccacactaccgccggccagccgccgcgaccactc 293  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  14654782 caaccaccacaccaccgccggtcagccgccgcgaccactc 14654743  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 16497606 - 16497562
Alignment:
Q  54 cagtggcggaactg--gggtggcaagggggagccacagccacccc 96  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||    
T  16497606 cagtggcggaactgcggggtggcaagggggagccaccgccacccc 16497562  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 2339226 - 2339181
Alignment:
Q  53 gcagtggcggaactgggg--tggcaagggggagccacagccacccc 96  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||    
T  2339226 gcagtggcggaactggggggtggcaagggggagccaccgccacccc 2339181  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 2733346 - 2733375
Alignment:
Q  67 ggggtggcaagggggagccacagccacccc 96  Q
    ||||||||||||||||||||||||||||||    
T  2733346 ggggtggcaagggggagccacagccacccc 2733375  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 52893141 - 52893185
Alignment:
Q  54 cagtggcggaactgggg--tggcaagggggagccacagccacccc 96  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||    
T  52893141 cagtggcggaactgggggttggcaagggggagccaccgccacccc 52893185  T

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