View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17982_high_1 (Length: 426)
Name: NF17982_high_1
Description: NF17982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17982_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 6 - 411
Target Start/End: Complemental strand, 42182612 - 42182207
Alignment:
| Q |
6 |
gtagattatacttgatcaaagactcctattagtgtctatttttctatttcatgtatctctttcctctcaaccgtacactatttttgttttctgcttgatg |
105 |
Q |
| |
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|||||||||| |||||||||| || ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42182612 |
gtagattatatttgatcaaaggctactattggtgtctacttttctatttcatgtatctctttcatctcaaccgtacactatttttgttttctgcttgatg |
42182513 |
T |
|
| Q |
106 |
tactttaacgcagcaatacgaaatctcaattacagaatcacaacactatgttcgtactcaccaagaataaattttgatttgtcacgacaacaattcaatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42182512 |
tactttaacgcagcaatacgaaatctcaattacagaatcacaacactatgttcgtactcaccaagaataaattttgatttgtcacgacaacaattcaatt |
42182413 |
T |
|
| Q |
206 |
tagtttcaagggttttccattttccctaatttataaattaattttaaatatccattggttttgcaaccatatgcaattattttaatgatttacaaagtaa |
305 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42182412 |
tagtttcaagggttttccattttccctaattcataaattaattttaaatatccattggttttgcaaccatatgcaattattttaatgatttacaaagtaa |
42182313 |
T |
|
| Q |
306 |
tatttccaattaattctaaatgataatatccaggaagtaattttataattcggtaaggtaaacaacaatttgatcatttcagaaactcaacccttatgtc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42182312 |
tatttccaattaattctaaatgataatatccaggaagtaattttataattcggtaaggtaaacaacaatttgatcatttcagaaactcaacccttatgtc |
42182213 |
T |
|
| Q |
406 |
taaaat |
411 |
Q |
| |
|
|||||| |
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|
| T |
42182212 |
taaaat |
42182207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 42181934 - 42182000
Alignment:
| Q |
21 |
tcaaagactcctattagtgtctatttttctatttcatgtatctctttcctctcaaccgtacactatt |
87 |
Q |
| |
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|||||| ||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42181934 |
tcaaaggctcttattaatgtctacgtttctatttcttgtatctctttcctctcaaccgtacactatt |
42182000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 411
Target Start/End: Original strand, 8987850 - 8988250
Alignment:
| Q |
11 |
ttatacttgatcaaagactcctattagtgtctatttttctatttcatgtatctctttcctctcaaccgtacactatttttgttttctgcttgatgtactt |
110 |
Q |
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||||| |||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8987850 |
ttatatttgatcaaaggctcctattagtgtctactcttctatttcatgtatctctttcctctcaaccgtacactatttttgttttctgcttgatgtactt |
8987949 |
T |
|
| Q |
111 |
taacgcagcaatacgaaatctcaattacagaatcacaacactatgttcgtactcaccaagaataaattttgatttgtcacgacaacaattcaatttagtt |
210 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8987950 |
taacgcagcaatacaaaatctcaattacagaatcgcaacactatgttcgtactcaccaagaataaattttgatttatcacgacaacaattcaatttagtt |
8988049 |
T |
|
| Q |
211 |
tcaagggttttccattttccctaatttataaattaattttaaatatccattggttttgcaaccatatgcaattattttaatgatttacaaagtaatattt |
310 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8988050 |
tcaagggttttccattttccctaattcatagtttaattttaaatatccattggttttgcaatcatatgcaattattttaatgatttacaaagtaatattt |
8988149 |
T |
|
| Q |
311 |
ccaattaattctaaatgataatatccaggaagtaattttataattcggtaaggtaaacaacaatttgatcatttcagaaactcaacccttatgtctaaaa |
410 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8988150 |
ccaattaattctaaatgataatattctggaagtaattttacaattcggtaaggtaaacaacaatttgatcatttcagaaactcaacccttatgtctaaaa |
8988249 |
T |
|
| Q |
411 |
t |
411 |
Q |
| |
|
| |
|
|
| T |
8988250 |
t |
8988250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 8988520 - 8988465
Alignment:
| Q |
32 |
tattagtgtctatttttctatttcatgtatctctttcctctcaaccgtacactatt |
87 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||| |
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|
| T |
8988520 |
tattagtgtctacgtttctatttcttgtatctctttcctctcaagcgtgcactatt |
8988465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 160 - 318
Target Start/End: Complemental strand, 29046633 - 29046477
Alignment:
| Q |
160 |
tactcaccaagaataaattttgatttgtcacgacaacaattcaatttagtttcaagggttttccattttccctaatttataaattaattttaaatatcca |
259 |
Q |
| |
|
||||||||||| |||||| |||||||||||| ||||| ||||||||||||| ||||||||||| |||||| ||||| ||||||||| |||| |||||| |
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| T |
29046633 |
tactcaccaaggataaatcttgatttgtcacagcaaca-ttcaatttagtttaaagggttttccgttttcc-taattcataaattaaatttatatatcct |
29046536 |
T |
|
| Q |
260 |
ttggttttgcaaccatatgcaattattttaatgatttacaaagtaatatttccaattaa |
318 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| ||| || |||||||| |
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|
| T |
29046535 |
ttgattttgcaaccatatgcaattattttaatgatttacaaagcaattttgccaattaa |
29046477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 163 - 296
Target Start/End: Complemental strand, 41975197 - 41975066
Alignment:
| Q |
163 |
tcaccaagaataaattttgatttgtcacgacaacaattcaatttagtttcaagggttttccattttccctaatttataaattaattttaaatatccattg |
262 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||| |||| || ||||| ||||||||| |||||||||||||| |||||||||| |
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| T |
41975197 |
tcaccaaggataaatcttgatttgtcacgacaacaattcaatttagtttaaaggatt--ccattatccctaattcataaattaattttatatatccattg |
41975100 |
T |
|
| Q |
263 |
gttttgcaaccatatgcaattattttaatgattt |
296 |
Q |
| |
|
|||||||| || |||||||||||||||| |||| |
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|
| T |
41975099 |
attttgcaatcagatgcaattattttaattattt |
41975066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 160 - 318
Target Start/End: Original strand, 37733047 - 37733203
Alignment:
| Q |
160 |
tactcaccaagaataaattttgatttgtcacgacaacaattcaatttagtttcaagggttttccattttccctaatttataaattaattttaaatatcca |
259 |
Q |
| |
|
||||||| ||| |||||| |||||||||||| ||||| ||||||||||||| ||||||||||| |||||| ||||| ||||||||| |||| |||||| |
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|
| T |
37733047 |
tactcactaaggataaatcttgatttgtcacagcaaca-ttcaatttagtttaaagggttttccgttttcc-taattcataaattaaatttatatatcct |
37733144 |
T |
|
| Q |
260 |
ttggttttgcaaccatatgcaattattttaatgatttacaaagtaatatttccaattaa |
318 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||| ||| ||| || |||||||| |
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|
| T |
37733145 |
ttgattttgcaatcatatgcaattattttaatgatttactaagcaattttgccaattaa |
37733203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 167 - 318
Target Start/End: Complemental strand, 21871364 - 21871215
Alignment:
| Q |
167 |
caagaataaattttgatttgtcacgacaacaattcaatttagtttcaagggttttccattttccctaatttataaattaattttaaatatccattggttt |
266 |
Q |
| |
|
|||| |||||| |||||||||||| ||||| ||||||||||||| ||||||||| |||||||| || || ||||||||| |||| |||||||||| ||| |
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|
| T |
21871364 |
caaggataaatcttgatttgtcacagcaaca-ttcaatttagtttaaagggtttttcattttcctta-ttcataaattaaatttatatatccattgattt |
21871267 |
T |
|
| Q |
267 |
tgcaaccatatgcaattattttaatgatttacaaagtaatatttccaattaa |
318 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||| || |||||||| |
|
|
| T |
21871266 |
tgcaatcatatgcaattattttaatgatttacaaagcaattttcccaattaa |
21871215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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