View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17982_low_2 (Length: 413)
Name: NF17982_low_2
Description: NF17982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17982_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 23993636 - 23993552
Alignment:
| Q |
18 |
gtattaaggctgaaggtgaagctaggttgcagagaaaagctgaggtaatgtttatggtgttgagagttactgacttgaaagctta |
102 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23993636 |
gtattaaggctgaaggtgaagctaagttgcagagaaaagctgaggtaatgtttatggtgttgagagttactgacttgaaagctta |
23993552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 5620453 - 5620502
Alignment:
| Q |
24 |
aggctgaaggtgaagctaggttgcagagaaaagctgaggtaatgtttatg |
73 |
Q |
| |
|
|||| ||||||||||| | |||||||||||||||||||||| | |||||| |
|
|
| T |
5620453 |
aggccgaaggtgaagcaaagttgcagagaaaagctgaggtagtttttatg |
5620502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 25661475 - 25661559
Alignment:
| Q |
18 |
gtattaaggctgaaggtgaagctaggttgcagagaaaagctgaggtaatgtttatggtgttgagagttactgacttgaaagctta |
102 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25661475 |
gtattaaggctgaaggtgaagctaagttgcagagaaaagctgaggtaacgtttatggtgttgagagttactgacttgaaagctta |
25661559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 7769649 - 7769565
Alignment:
| Q |
18 |
gtattaaggctgaaggtgaagctaggttgcagagaaaagctgaggtaatgtttatggtgttgagagttactgacttgaaagctta |
102 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7769649 |
gtattaaggctgaaggtgaagctaagttgcagagaaaagttgaggtaatgtttatggtgttgagagttactgacttgaaggctta |
7769565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University