View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17982_low_4 (Length: 317)
Name: NF17982_low_4
Description: NF17982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17982_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 39951291 - 39951012
Alignment:
| Q |
16 |
aagaaatacgcatcaagtcttactataaaagccacatctaaaaacaaaagctatgaacaaaatcaataatcaggttggacttaggagtgagtttaccctg |
115 |
Q |
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| T |
39951291 |
aagaaatgcgcatcaagtcttactgtaaaagccacagctaaaaacaaaagctatgaacaaaatcaataatcaggttggagttaggagtgagtttaccctg |
39951192 |
T |
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| Q |
116 |
atttgtcatataaatagctacgttgaattcctcagctatcttgatcaatcgagaaagcatctgtgccaatttttgctgcaaagaaactttttcatttcag |
215 |
Q |
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| T |
39951191 |
atttgtcatataaacagcaacgttaaattcctcagctatcttgatcaatcgagaaagcatctgtgccaatttttgctgcaaagaaac-ttttcatttcag |
39951093 |
T |
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| Q |
216 |
taaaagcggacataaagggattaaaaatctgttagtgcatgttcatgactaattctcagccctggcgctcagcaagctctc |
296 |
Q |
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| T |
39951092 |
taaaagctaacataaagggattaaaaatctgttagtgcatgttcatgactaattcacagacctggcactcagcaagctctc |
39951012 |
T |
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Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 40 - 317
Target Start/End: Complemental strand, 46402643 - 46402365
Alignment:
| Q |
40 |
ataaaagccacatctaaaaacaaaagctatgaacaaaatcaataatcaggttggacttaggagtgagtttaccctgatttgtcatataaatagctacgtt |
139 |
Q |
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|||||||||||| || ||||| |||||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| || || |
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| T |
46402643 |
ataaaagccacagcttaaaactaaagctgtgaacaaaaacaataatcaggttggacttgggagtgaatttaccctgatttgtcatataaacagcaacatt |
46402544 |
T |
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| Q |
140 |
gaattcctcagctatcttgatcaatcgagaaagcatctgtgccaatttttgctgcaaagaaactttttcatttcagtaaaagcggaca-taaagggatta |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| |
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| T |
46402543 |
gaattcctcagctatcttgatcaatcgagaaagcatctgtgccaatttttgctgcaaaggaactttttcatttcagtaaaagctgacacaaaagggatta |
46402444 |
T |
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| Q |
239 |
aaaatctgttagtgcatgttcatgactaattctcagccctggcgctcagcaagctctcctcttcctgtgaagtcaaccc |
317 |
Q |
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|||||||||||||||||||||||||| |||| | | |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46402443 |
aaaatctgttagtgcatgttcatgacagattcacggacctggcgctcagcaagctctcctcttccagtgaagtcaaccc |
46402365 |
T |
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