View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17982_low_6 (Length: 266)
Name: NF17982_low_6
Description: NF17982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17982_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 198
Target Start/End: Original strand, 49720879 - 49721024
Alignment:
| Q |
51 |
aaaaaagttgacattttaagtctttgaagtaagcaagagcttttcttatttgaggaggtcattgagtaaccacaacattaggttcaccggcaggtgcatt |
150 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||| |
|
|
| T |
49720879 |
aaaaatgttgacatttgaagtctttgaagtaagcaagagcttttcttatttgaggaggtcatcaggtaaccacaacatcaggttcaccggtaggtgtatt |
49720978 |
T |
|
| Q |
151 |
aagtgctatagacgtacgtatgtgttagagtgaactttgagtttgaga |
198 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
49720979 |
tagtgctatagacgtaggtatgtgttggagtgaac--tgagtttgaga |
49721024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 49720627 - 49720671
Alignment:
| Q |
9 |
acatcatcatataagaaatcattggcaacatcaagttgtttcaaa |
53 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49720627 |
acatcaccgtataagaaatcattggcaacatcaagttgcttcaaa |
49720671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University