View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17982_low_7 (Length: 238)
Name: NF17982_low_7
Description: NF17982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17982_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 49871592 - 49871368
Alignment:
| Q |
1 |
ttaagcctaacattgttgttgcacaagatggtagtggtcaatttaagactttgactgaggcacgtgcaactgttcccaagaagaacaaagttccttttgt |
100 |
Q |
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| T |
49871592 |
ttaagcctaacgttgttgttgcacaagatggtagtggtcaatttaagactttgactgaggcacttgcaactgttcccaagaagaacaaagttccttttgt |
49871493 |
T |
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| Q |
101 |
tattcatgttaaggctggtatctataaggagtatgttgctctggataaccatagggaccatgttactattattggtgatggtcccaaaaagaccatattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871492 |
tattcatgttaaggctggtatctataaggagtatgttgctctggataaccatagggaccatgttactattattggtgatggtcccaaaaagaccatattt |
49871393 |
T |
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| Q |
201 |
actggtagcaaaagctatggtgatg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
49871392 |
actggtagcaaaagctatggtgatg |
49871368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 49865661 - 49865437
Alignment:
| Q |
1 |
ttaagcctaacattgttgttgcacaagatggtagtggtcaatttaagactttgactgaggcacgtgcaactgttcccaagaagaacaaagttccttttgt |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| ||| ||||||||||||| |
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| T |
49865661 |
ttaagcctaatgctgttgttgcacaagatggtagtggtcaatttaagacattgactgaggcacttgcactagttcccaagaaaaaccaagttccttttgt |
49865562 |
T |
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| Q |
101 |
tattcatgttaaggctggtatctataaggagtatgttgctctggataaccatagggaccatgttactattattggtgatggtcccaaaaagaccatattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
49865561 |
tattcatgttaaggctggtatctataaggagtatgtttctgtggataaagatagggaccatgttactattattggcgatggtcccacaaagaccatattt |
49865462 |
T |
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| Q |
201 |
actggtagcaaaagctatggtgatg |
225 |
Q |
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||||| ||||||||||||| ||||| |
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| T |
49865461 |
actggcagcaaaagctatgctgatg |
49865437 |
T |
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