View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17983_high_2 (Length: 611)
Name: NF17983_high_2
Description: NF17983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17983_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 16 - 548
Target Start/End: Complemental strand, 26053937 - 26053390
Alignment:
| Q |
16 |
aaaataaagaattgagagaacatgtgatgaaaacatacaactttggaggtccttaaaagnnnnnnngaattcctagcaaaacgataaagagtacagtgct |
115 |
Q |
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| T |
26053937 |
aaaataaagaattggtagaacatgtgatgaaaacatacaactttggaggtccttaaaagaaaaaaagaattcctagcaaaacgataaagagtacggtgat |
26053838 |
T |
|
| Q |
116 |
aaagaacaatcgttaaccttataacttctaatgtctttagtctcccctggctctggactcacagttgcatgctttaactttcctttttctacgaaacaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26053837 |
aaagaacaatcgttaaccttataacttctaatgtctttagtctcccctggctctggactcacagttgcatgctttaactttcctttttctacaaaacaaa |
26053738 |
T |
|
| Q |
216 |
agttgcaaaggaaaaattagaaataaaattgaaatttggtggacatgcatccacttgtttctcaaacgttgagaatgtcacttagcctgttcctctagaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26053737 |
agttgcaaaggaaaaattagaaataaaattgaaatttggtggacatgcatccacttgtttctcaaacgttgagaatgtcatttagcctgttcctctagaa |
26053638 |
T |
|
| Q |
316 |
ttgcaataataagttgaatacctgcagcactgattcttccaacatgatgcaaagcattagtaagtgccgattttccaacatttggaagcccaattaacat |
415 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26053637 |
ttgcaataataacttgaatacctgcagcactgattctcccaacatgatgcaaagcattagtaagtgccgattttccaacatttggaagcccaattaacat |
26053538 |
T |
|
| Q |
416 |
tactgttgcagtatatttattagcttgatcagttctcctcaactttcccacctgacgttgtataaggcttaggaactgtttaaaaca------------- |
502 |
Q |
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| T |
26053537 |
tactgttgcagtatatttattagcttgatccgttctcctcaactttcccacctgccgttgtataaggcttaggaactgtctaaaacaaaaggtctttatt |
26053438 |
T |
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| Q |
503 |
--taaattagttcatgaacagataaaaagaaagagggcgagaaaaaag |
548 |
Q |
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| T |
26053437 |
agtaaattagtttatgaacagataaaaagaaagagggcgagaaaaaag |
26053390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 543 - 593
Target Start/End: Complemental strand, 26053041 - 26052991
Alignment:
| Q |
543 |
aaaaaggaacttatattttacctgtctgatgctctccttgttatgagcatc |
593 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26053041 |
aaaaaggaacttatagtttacctgtctgatgctctccttgttatgagcatc |
26052991 |
T |
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