View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17983_high_7 (Length: 256)

Name: NF17983_high_7
Description: NF17983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17983_high_7
NF17983_high_7
[»] chr6 (3 HSPs)
chr6 (169-249)||(8753705-8753785)
chr6 (192-245)||(7093183-7093236)
chr6 (192-245)||(12913040-12913093)
[»] chr7 (14 HSPs)
chr7 (169-235)||(19293955-19294021)
chr7 (192-249)||(19323481-19323538)
chr7 (192-252)||(5555020-5555080)
chr7 (192-235)||(15668951-15668994)
chr7 (179-245)||(5900519-5900585)
chr7 (195-245)||(40858812-40858862)
chr7 (192-245)||(18300235-18300288)
chr7 (197-245)||(29126643-29126691)
chr7 (204-245)||(32574742-32574783)
chr7 (192-245)||(38141500-38141553)
chr7 (19-52)||(46627619-46627652)
chr7 (195-245)||(25289391-25289441)
chr7 (192-230)||(29626175-29626213)
chr7 (192-245)||(12621413-12621466)
[»] chr4 (6 HSPs)
chr4 (192-245)||(30599019-30599072)
chr4 (195-245)||(47591245-47591295)
chr4 (202-245)||(48640001-48640044)
chr4 (202-245)||(23108565-23108608)
chr4 (192-231)||(40346516-40346555)
chr4 (192-245)||(37871439-37871492)
[»] chr5 (3 HSPs)
chr5 (195-245)||(26369725-26369775)
chr5 (192-245)||(22581182-22581235)
chr5 (192-245)||(40974058-40974111)
[»] chr3 (3 HSPs)
chr3 (195-245)||(10437221-10437271)
chr3 (203-245)||(15029349-15029391)
chr3 (169-234)||(28432078-28432143)
[»] chr8 (2 HSPs)
chr8 (192-245)||(13090567-13090620)
chr8 (195-245)||(9932886-9932936)
[»] chr1 (4 HSPs)
chr1 (192-245)||(34548623-34548676)
chr1 (195-245)||(26676159-26676209)
chr1 (168-236)||(16968138-16968206)
chr1 (192-245)||(31912339-31912392)
[»] scaffold0432 (1 HSPs)
scaffold0432 (204-245)||(8372-8413)


Alignment Details
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 8753785 - 8753705
Alignment:
Q  169 cttggaagtagaggcgccgagtattagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtattattt 249  Q
    ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||    
T  8753785 cttggaagtggaggcgccgattattagcttgggaggaggagaaggtgcgggagtgttgtaattttttaactaatattattt 8753705  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 7093183 - 7093236
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||||||| ||||    
T  7093183 ttagcttgggaggaggggaaggtgcgggagtgttgtgatattttaactaatatt 7093236  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 12913093 - 12913040
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||    
T  12913093 ttagcttgggaggaggagaaggtgcgggagtgttgtgatattttatctaatatt 12913040  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 19293955 - 19294021
Alignment:
Q  169 cttggaagtagaggcgccgagtattagcttggaaggaggagaaggtgcgggagtgttgtgatttttt 235  Q
    ||||||||| |||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||    
T  19293955 cttggaagtggaggcgccgattattatcttgggaggaggagaaggtgtgggagtgttgtgatttttt 19294021  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 19323481 - 19323538
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtattattt 249  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  19323481 ttagcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattattt 19323538  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 5555020 - 5555080
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtattatttagc 252  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||||    
T  5555020 ttagcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgtttagc 5555080  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 15668951 - 15668994
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgatttttt 235  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  15668951 ttagcttgggaggaggagaaggtgcgggagtgttgtgatttttt 15668994  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 5900585 - 5900519
Alignment:
Q  179 gaggcgccgagtattagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||| || | |||||||||||| ||||    
T  5900585 gaggcgccgattattagcttgggaggaggagaaggtgcaggagtattataattttttaactaatatt 5900519  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 40858862 - 40858812
Alignment:
Q  195 gcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  40858862 gcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatatt 40858812  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 18300288 - 18300235
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    ||||||||| ||||||| ||||||||||||||||||||||| ||||||| ||||    
T  18300288 ttagcttgggaggaggaaaaggtgcgggagtgttgtgatttcttaactattatt 18300235  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 29126691 - 29126643
Alignment:
Q  197 ttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    |||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  29126691 ttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatatt 29126643  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 32574742 - 32574783
Alignment:
Q  204 gaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  32574742 gaggagaaggtgcgggagtgttgtaattttttaactaatatt 32574783  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 38141500 - 38141553
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    ||||||||| |||||| |||||||| ||||||||||||| ||||||||| ||||    
T  38141500 ttagcttgggaggaggggaaggtgcaggagtgttgtgatattttaactaatatt 38141553  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 46627619 - 46627652
Alignment:
Q  19 ttataagggtacgacgtcgtcctagagtccattg 52  Q
    ||||||||||||||||||||||||||||||||||    
T  46627619 ttataagggtacgacgtcgtcctagagtccattg 46627652  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 25289441 - 25289391
Alignment:
Q  195 gcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    |||||| ||||||||||||||||||||| |||| || ||||||||| ||||    
T  25289441 gcttgggaggaggagaaggtgcgggagtattgtaatattttaactaatatt 25289391  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 29626175 - 29626213
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgat 230  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  29626175 ttagcttgggaggaggggaaggtgcgggagtgttgtgat 29626213  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 12621466 - 12621413
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    |||| |||| |||||||| |||||||||||||||||||| ||||| ||| ||||    
T  12621466 ttagtttgggaggaggagcaggtgcgggagtgttgtgatattttatctaatatt 12621413  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 30599072 - 30599019
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||| ||||    
T  30599072 ttagcttcggaggaggagaaggtgcgggagtgttgtgattttttaactaatatt 30599019  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 47591295 - 47591245
Alignment:
Q  195 gcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  47591295 gcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatatt 47591245  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 48640001 - 48640044
Alignment:
Q  202 aggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  48640001 aggaggagaaggtgcgggagtgttgtgatattttaactaatatt 48640044  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 23108608 - 23108565
Alignment:
Q  202 aggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||    
T  23108608 aggaggagaaggtgcgggagtgttgtgatattttatctaatatt 23108565  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 40346555 - 40346516
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgatt 231  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  40346555 ttagcttgggaggaggggaaggtgcgggagtgttgtgatt 40346516  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 37871492 - 37871439
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    ||||||||| || |||||||||||| ||||||||||||| ||||| ||| ||||    
T  37871492 ttagcttgggagaaggagaaggtgcaggagtgttgtgatattttatctaatatt 37871439  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 26369775 - 26369725
Alignment:
Q  195 gcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  26369775 gcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatatt 26369725  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 22581235 - 22581182
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  22581235 ttagcgtgggaggaggagaaggtgcgggagtgttgtgatgttttaactaatatt 22581182  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 40974111 - 40974058
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    ||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||    
T  40974111 ttagcttgggaggaggagaaggtgcgggagtattgtgatttcttaactaatatt 40974058  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 10437271 - 10437221
Alignment:
Q  195 gcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  10437271 gcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatatt 10437221  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 15029349 - 15029391
Alignment:
Q  203 ggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
T  15029349 ggaggagaaggtgcgggagtgttgtgatgttttaactaatatt 15029391  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 28432078 - 28432143
Alignment:
Q  169 cttggaagtagaggcgccgagtattagcttggaaggaggagaaggtgcgggagtgttgtgattttt 234  Q
    ||||||||| |||||||||  ||||| ||| | |||||||||| ||||||||||| ||||||||||    
T  28432078 cttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcgggagtgctgtgattttt 28432143  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 13090620 - 13090567
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||    
T  13090620 ttagcttgggaggaggagaaggtgcgggagtgttgtgatattttatctaatatt 13090567  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 9932936 - 9932886
Alignment:
Q  195 gcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||||| ||||    
T  9932936 gcttgggaggaggataaggtgcgggagtgttgtgatattttaactaatatt 9932886  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 34548623 - 34548676
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||    
T  34548623 ttagcttgggaggaggagaaggtgcgggagtgttgtgatattttatctaatatt 34548676  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 26676159 - 26676209
Alignment:
Q  195 gcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    |||||| ||||||||||||||| ||||||||||||| ||||||||| ||||    
T  26676159 gcttgggaggaggagaaggtgctggagtgttgtgatattttaactaatatt 26676209  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 16968206 - 16968138
Alignment:
Q  168 acttggaagtagaggcgccgagtattagcttggaaggaggagaaggtgcgggagtgttgtgatttttta 236  Q
    |||||||| | |||||||||| ||||||||||| ||||||||||||| || ||||| || || ||||||    
T  16968206 acttggaattggaggcgccgattattagcttgggaggaggagaaggtacgcgagtgatgagacttttta 16968138  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 31912392 - 31912339
Alignment:
Q  192 ttagcttggaaggaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    ||||| ||| ||||||||||||||||||| ||||||||| ||||| ||| ||||    
T  31912392 ttagcatgggaggaggagaaggtgcgggaatgttgtgatattttatctaatatt 31912339  T

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Target: scaffold0432 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 8372 - 8413
Alignment:
Q  204 gaggagaaggtgcgggagtgttgtgattttttaactagtatt 245  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||    
T  8372 gaggagaagttgcgggagtgttgtgatttcttaactaatatt 8413  T

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