View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17983_low_15 (Length: 224)

Name: NF17983_low_15
Description: NF17983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17983_low_15
NF17983_low_15
[»] chr8 (18 HSPs)
chr8 (1-122)||(6345305-6345425)
chr8 (1-122)||(31127237-31127357)
chr8 (1-122)||(37948921-37949041)
chr8 (1-122)||(43620015-43620145)
chr8 (1-122)||(26721134-26721264)
chr8 (1-105)||(1265121-1265235)
chr8 (37-122)||(26721290-26721374)
chr8 (3-122)||(3106183-3106301)
chr8 (32-122)||(13470864-13470953)
chr8 (31-122)||(32906903-32906993)
chr8 (31-122)||(4602596-4602686)
chr8 (31-106)||(4267360-4267435)
chr8 (7-122)||(42200050-42200174)
chr8 (1-46)||(4602681-4602726)
chr8 (3-108)||(15265966-15266070)
chr8 (1-45)||(32906994-32907038)
chr8 (3-46)||(4267430-4267473)
chr8 (29-72)||(40619725-40619768)
[»] chr7 (11 HSPs)
chr7 (1-122)||(27392591-27392711)
chr7 (1-122)||(1575843-1575973)
chr7 (1-108)||(28694701-28694808)
chr7 (1-122)||(36482616-36482731)
chr7 (3-106)||(31280160-31280263)
chr7 (37-122)||(323627-323711)
chr7 (36-106)||(36582534-36582604)
chr7 (32-122)||(6714228-6714317)
chr7 (1-97)||(40303678-40303775)
chr7 (1-46)||(10286492-10286537)
chr7 (64-122)||(10286414-10286471)
[»] chr1 (10 HSPs)
chr1 (1-122)||(5559393-5559513)
chr1 (1-122)||(14461716-14461831)
chr1 (42-108)||(24063941-24064007)
chr1 (3-122)||(41198490-41198613)
chr1 (3-122)||(33719580-33719698)
chr1 (31-122)||(41074903-41074993)
chr1 (3-108)||(28655593-28655698)
chr1 (29-72)||(11956332-11956375)
chr1 (31-122)||(24614743-24614833)
chr1 (3-46)||(24614828-24614871)
[»] chr5 (9 HSPs)
chr5 (1-122)||(40987340-40987470)
chr5 (1-122)||(13521491-13521611)
chr5 (3-122)||(27110655-27110773)
chr5 (20-106)||(41061218-41061304)
chr5 (32-122)||(13554768-13554857)
chr5 (39-122)||(1495912-1495994)
chr5 (1-122)||(33160518-33160648)
chr5 (7-106)||(42716110-42716209)
chr5 (3-40)||(14718254-14718291)
[»] chr4 (16 HSPs)
chr4 (1-122)||(24575133-24575263)
chr4 (1-122)||(9279925-9280055)
chr4 (1-122)||(46251909-46252029)
chr4 (1-105)||(7700297-7700411)
chr4 (31-122)||(47498856-47498946)
chr4 (3-106)||(34276963-34277066)
chr4 (1-122)||(18780905-18781035)
chr4 (31-106)||(42414565-42414640)
chr4 (3-105)||(40436458-40436560)
chr4 (4-106)||(56078452-56078554)
chr4 (3-106)||(42430004-42430112)
chr4 (31-106)||(3756978-3757053)
chr4 (57-122)||(47997031-47997095)
chr4 (29-72)||(24859057-24859100)
chr4 (43-105)||(6184090-6184152)
chr4 (3-52)||(31938653-31938702)
[»] chr6 (8 HSPs)
chr6 (1-122)||(16705343-16705456)
chr6 (1-122)||(7608258-7608388)
chr6 (32-122)||(21946710-21946799)
chr6 (23-106)||(10484386-10484472)
chr6 (3-122)||(3901117-3901240)
chr6 (10-102)||(10386171-10386261)
chr6 (3-97)||(33747895-33747990)
chr6 (1-46)||(10517600-10517645)
[»] chr3 (10 HSPs)
chr3 (1-105)||(37282623-37282737)
chr3 (1-105)||(19636524-19636638)
chr3 (37-122)||(32055893-32055977)
chr3 (31-122)||(25706301-25706392)
chr3 (31-106)||(1030476-1030551)
chr3 (37-105)||(39717244-39717312)
chr3 (1-45)||(48973718-48973762)
chr3 (17-108)||(48085299-48085390)
chr3 (3-45)||(29283081-29283123)
chr3 (1-46)||(25706387-25706432)
[»] chr2 (9 HSPs)
chr2 (1-122)||(16672012-16672143)
chr2 (3-106)||(21352298-21352401)
chr2 (3-97)||(22596099-22596198)
chr2 (1-46)||(18511635-18511680)
chr2 (3-122)||(10997252-10997365)
chr2 (3-97)||(15441159-15441253)
chr2 (64-122)||(18511557-18511614)
chr2 (7-93)||(34439868-34439954)
chr2 (3-52)||(7418197-7418246)
[»] scaffold0034 (1 HSPs)
scaffold0034 (20-122)||(47761-47862)
[»] scaffold0140 (1 HSPs)
scaffold0140 (3-106)||(15505-15608)
[»] scaffold0396 (1 HSPs)
scaffold0396 (39-105)||(1290-1356)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 6345425 - 6345305
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6345425 ataataaataagtataaaaatttacttttgcggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacat 6345326  T
Q  101 ccaaacaccatccaaaaatatt 122  Q
    ||||||| ||||||||||||||    
T  6345325 ccaaaca-catccaaaaatatt 6345305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 31127237 - 31127357
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31127237 ataataaataagtataaaaatttacttttgcggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacat 31127336  T
Q  101 ccaaacaccatccaaaaatatt 122  Q
    ||||||| ||||||||||||||    
T  31127337 ccaaaca-catccaaaaatatt 31127357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 37948921 - 37949041
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37948921 ataataaataagtataaaaatttacttttgcggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacat 37949020  T
Q  101 ccaaacaccatccaaaaatatt 122  Q
    ||||||| ||||||||||||||    
T  37949021 ccaaaca-catccaaaaatatt 37949041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 43620015 - 43620145
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggtt----------cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 90  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43620015 ataataaataagtataaaaatttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 43620114  T
Q  91 aaaacaatatccaaacaccatccaaaaatatt 122  Q
    ||| ||| ||||||||| ||||||||||||||    
T  43620115 aaagcaacatccaaaca-catccaaaaatatt 43620145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 26721134 - 26721264
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggtt----------cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 90  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||| ||||  |||||||||||||||||||||||    
T  26721134 ataataaataagtataaaaatttacttttgcggtttggtttggttcggttcggttttgaaaacgcaatccaaaataagatccgatcatagcggtttttcc 26721233  T
Q  91 aaaacaatatccaaacaccatccaaaaatatt 122  Q
    ||||||| ||||||||| ||||||||||||||    
T  26721234 aaaacaacatccaaaca-catccaaaaatatt 26721264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 1265235 - 1265121
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggtt----------ttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 90  Q
    |||||||||||||||||||||||||||||||||||||||| ||||          |||||||||||||||||||||||||||||||||||||||||||||    
T  1265235 ataataaataagtataaaaatttacttttgcggttcggtttggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 1265136  T
Q  91 aaaacaatatccaaa 105  Q
    ||||||| |||||||    
T  1265135 aaaacaacatccaaa 1265121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 26721290 - 26721374
Alignment:
Q  37 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  26721290 ggttcggttttgaaaacgcaatccgaaatctgatttgatcatagcggtttttccaaaacaacgtccaaaca-catccaaaaatatt 26721374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 3106301 - 3106183
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatcc 102  Q
    ||||||| ||||| || |||||||||||||||||||||||||||||| || |  |||| ||||||||| ||||| |||| |||||| |||||||| ||||    
T  3106301 aataaattagtattaatatttacttttgcggttcggttcggttttgagaaagtgatccaaaatccgatacgatcctagcagtttttacaaaacaacatcc 3106202  T
Q  103 aaacaccatccaaaaatatt 122  Q
    ||||  ||||||||||||||    
T  3106201 aaac-gcatccaaaaatatt 3106183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 13470953 - 13470864
Alignment:
Q  32 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    |||| |||||||||||||||| |||| |||||| ||||||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||    
T  13470953 ggtttggttcggttttgaaaaggcaaaccgaaaaccgatccgatcgtagcgttttttccaaaacaacatccaaaca-catccaaaaatatt 13470864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 32906993 - 32906903
Alignment:
Q  31 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    ||||| |||||||||||||||| |  ||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  32906993 cggtttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaaca-catccaaaaatatt 32906903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 4602686 - 4602596
Alignment:
Q  31 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    ||||| |||||||||||||||| |  ||||||||||||| || |||||||||||||| ||||||||| ||||||||| | ||||||||||||    
T  4602686 cggtttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaaca-cgtccaaaaatatt 4602596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 4267435 - 4267360
Alignment:
Q  31 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 106  Q
    ||||| |||||||||||||||| |  |||| ||||||||||||||| ||||||||||| ||||| || ||||||||    
T  4267435 cggtttggttcggttttgaaaaggtgatccaaaatccgatccgatcttagcggtttttacaaaataacatccaaac 4267360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 42200050 - 42200174
Alignment:
Q  7 aataagtataaaaatttacttttgcggttcggttcggttt----------tgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaaca 96  Q
    ||||||||| || |||||||||||||||||||||||||||          ||| || |  ||||||||| ||||||||||||| ||||||||  ||||||    
T  42200050 aataagtattaatatttacttttgcggttcggttcggtttgatctggtattgagaaagtgatccgaaattcgatccgatcataacggtttttataaaaca 42200149  T
Q  97 atatccaaacaccatccaaaaatatt 122  Q
    | ||||||||| |||| |||||||||    
T  42200150 acatccaaaca-catctaaaaatatt 42200174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4602726 - 4602681
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttt 46  Q
    |||||||||||| || ||||| ||||||||||||||||||||||||    
T  4602726 ataataaataagaattaaaatctacttttgcggttcggttcggttt 4602681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 15266070 - 15265966
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatcc 102  Q
    |||||||| |||| |||||||||||||||||||  ||||||||| ||||| |  |||| ||||  ||||||||   |||||||||| ||||||| ||| |    
T  15266070 aataaataggtattaaaatttacttttgcggtt-tgttcggtttggaaaatgtgatccaaaatttgatccgatatgagcggtttttacaaaacactattc 15265972  T
Q  103 aaacac 108  Q
    ||||||    
T  15265971 aaacac 15265966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32907038 - 32906994
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggtt 45  Q
    |||||||||||| || ||||| |||||||||||||||||||||||    
T  32907038 ataataaataagaattaaaatctacttttgcggttcggttcggtt 32906994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 4267473 - 4267430
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttt 46  Q
    ||||||||||||| || ||||| |||||||||||||||||||||    
T  4267473 aataaataagtattaatatttatttttgcggttcggttcggttt 4267430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 40619725 - 40619768
Alignment:
Q  29 tgcggttcggttcggttttgaaaacgcaatccgaaatccgatcc 72  Q
    ||||||||||||||||||||||||  |||||| |||||||||||    
T  40619725 tgcggttcggttcggttttgaaaaatcaatccaaaatccgatcc 40619768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 8e-51; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 27392711 - 27392591
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatat 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  27392711 ataataaataagtataaaaatttacttttgcggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggttttttcaaaacaacat 27392612  T
Q  101 ccaaacaccatccaaaaatatt 122  Q
    ||||||| ||||||||||||||    
T  27392611 ccaaaca-catccaaaaatatt 27392591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 1575973 - 1575843
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggtt----------cggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 90  Q
    ||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1575973 ataataaataagtataaaaatttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 1575874  T
Q  91 aaaacaatatccaaacaccatccaaaaatatt 122  Q
    ||||||| ||||||||| ||||||||||||||    
T  1575873 aaaacaacatccaaaca-catccaaaaatatt 1575843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 28694808 - 28694701
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatat 100  Q
    |||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||    
T  28694808 ataatatataagtatgaaaatttactattgcggttcggtttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacat 28694709  T
Q  101 ccaaacac 108  Q
    ||||||||    
T  28694708 ccaaacac 28694701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 36482616 - 36482731
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatat 100  Q
    ||||||||||||| ||||||||||||||||||||     |||||||||||||  |||||||||| ||||||||||||||| |||||||| ||||||| ||    
T  36482616 ataataaataagtgtaaaaatttacttttgcggt-----tcggttttgaaaagacaatccgaaaaccgatccgatcatagtggtttttctaaaacaacat 36482710  T
Q  101 ccaaacaccatccaaaaatatt 122  Q
    ||||||| ||||||||||||||    
T  36482711 ccaaaca-catccaaaaatatt 36482731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 31280160 - 31280263
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatcc 102  Q
    ||||||||||||| || ||||| ||||||||||||||||||||||||||| |  |||| ||||||||||||||| || || ||||| |||||||| ||||    
T  31280160 aataaataagtattaatatttatttttgcggttcggttcggttttgaaaaagtgatccaaaatccgatccgatcttaacgatttttacaaaacaacatcc 31280259  T
Q  103 aaac 106  Q
    ||||    
T  31280260 aaac 31280263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 323627 - 323711
Alignment:
Q  37 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    |||||||||||||||| |  ||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  323627 ggttcggttttgaaaaggtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaaca-catccaaaaatatt 323711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 36582534 - 36582604
Alignment:
Q  36 cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 106  Q
    ||||||||||||||||| |  ||||||||||||||| |||| ||||||||||| |||||||| ||||||||    
T  36582534 cggttcggttttgaaaaagtgatccgaaatccgatcagatcttagcggtttttacaaaacaacatccaaac 36582604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 6714228 - 6714317
Alignment:
Q  32 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    |||||||||| ||||||| || |  || ||||||||||||||||| ||||||||||| ||||| || ||||||||| |||||||| |||||    
T  6714228 ggttcggttcagttttgagaaagtgattcgaaatccgatccgatcctagcggtttttacaaaataacatccaaaca-catccaaatatatt 6714317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 40303775 - 40303678
Alignment:
Q  1 ataataaataagta-taaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaa 97  Q
    |||||||||||| | ||||||||||||||||||||||| ||| ||||||||||    ||| ||||||| |||| ||| ||| ||||||| ||||||||    
T  40303775 ataataaataagcactaaaaatttacttttgcggttcgattcagttttgaaaaaatgatctgaaatccaatccaatcttagtggtttttacaaaacaa 40303678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10286537 - 10286492
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttt 46  Q
    |||||||||||| || ||||| ||||||||||||||||||||||||    
T  10286537 ataataaataagaattaaaatctacttttgcggttcggttcggttt 10286492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 10286471 - 10286414
Alignment:
Q  64 atccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    |||||| || || ||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  10286471 atccgaaccaattatagcggttttgccaaaacaacatccaaaca-catccaaaaatatt 10286414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 5559513 - 5559393
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatat 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| ||    
T  5559513 ataataaataagtataaaaatttacttttgcggttcggtttggttttgaaaatgcaatccgaaatctgatccgatcatggcggtttttccaaaacaacat 5559414  T
Q  101 ccaaacaccatccaaaaatatt 122  Q
    ||||||| ||||||||||||||    
T  5559413 ccaaaca-catccaaaaatatt 5559393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 14461831 - 14461716
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatat 100  Q
    |||||||||||| |||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14461831 ataataaataagaataaaaatttacttttgcggttcggtt-----ttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacat 14461737  T
Q  101 ccaaacaccatccaaaaatatt 122  Q
    ||||||| ||||||||||||||    
T  14461736 ccaaaca-catccaaaaatatt 14461716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 24063941 - 24064007
Alignment:
Q  42 ggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacac 108  Q
    ||||||||||| |  |||||||||||||||| |||||||||||||||||||||||| ||||| ||||    
T  24063941 ggttttgaaaaagtgatccgaaatccgatccaatcatagcggtttttccaaaacaacatccatacac 24064007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 41198490 - 41198613
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggtt-----ttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaa 97  Q
    ||||||||||| | || ||||| ||||||||||||||| ||||     ||| ||| |  |||||||||||||||||||| ||||||||||| ||||||||    
T  41198490 aataaataagttttaatatttatttttgcggttcggtttggttcagttttggaaaagtgatccgaaatccgatccgatcttagcggtttttacaaaacaa 41198589  T
Q  98 tatccaaacaccatccaaaaatatt 122  Q
     |||||| || |||||||| |||||    
T  41198590 catccaatca-catccaaatatatt 41198613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 33719580 - 33719698
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatcc 102  Q
    |||||||||||||  | ||||||||||| ||||| |||| |||||||||| |  ||| |||||  ||| ||||| |||| |||||| |||||||| ||||    
T  33719580 aataaataagtattcatatttacttttgtggttcagttcagttttgaaaaagtgatctgaaatttgattcgatcctagcagtttttacaaaacaacatcc 33719679  T
Q  103 aaacaccatccaaaaatatt 122  Q
    ||||  ||||||||||||||    
T  33719680 aaac-gcatccaaaaatatt 33719698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 41074993 - 41074903
Alignment:
Q  31 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    |||||||||| ||||||||| | |  ||||||||| | ||| || ||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  41074993 cggttcggtttggttttgaagaggtgatccgaaattcaatctgaccatagcggttttttcaaaacaacatccaaaca-catccaaaaatatt 41074903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 28655698 - 28655593
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatcc 102  Q
    ||||||||||||| || |||||||| ||| |||||||| |||||||| || |  ||| ||||| |||||||||| ||  | ||||| |||||||| ||||    
T  28655698 aataaataagtattaacatttacttatgcagttcggtttggttttgagaaagtgatctgaaattcgatccgatcctattgatttttacaaaacaacatcc 28655599  T
Q  103 aaacac 108  Q
    ||||||    
T  28655598 aaacac 28655593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 11956332 - 11956375
Alignment:
Q  29 tgcggttcggttcggttttgaaaacgcaatccgaaatccgatcc 72  Q
    ||||||||||||||||||||||||  |||||| |||||||||||    
T  11956332 tgcggttcggttcggttttgaaaaatcaatccaaaatccgatcc 11956375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 24614833 - 24614743
Alignment:
Q  31 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    ||||| ||||||||||| |||| |  |||| ||||| ||||||||| ||||||||||| |||||| | ||||||| | |||||||| |||||    
T  24614833 cggtttggttcggttttaaaaaagtgatccaaaatctgatccgatcttagcggtttttacaaaacgacatccaaa-agcatccaaatatatt 24614743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 24614871 - 24614828
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttt 46  Q
    ||||||||||||| || ||||| |||||||||||||||||||||    
T  24614871 aataaataagtattaatatttatttttgcggttcggttcggttt 24614828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 40987470 - 40987340
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggtt----------cggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 90  Q
    ||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40987470 ataataaataagtataaaaatttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 40987371  T
Q  91 aaaacaatatccaaacaccatccaaaaatatt 122  Q
    ||||||| ||||||||| ||||||||||||||    
T  40987370 aaaacaacatccaaaca-catccaaaaatatt 40987340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 13521611 - 13521491
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||   ||||||||||| ||||||||||| ||    
T  13521611 ataataaataagtataaaaatttacttttgcggttcggttcggttttgaaaatgcaatttgaaatccgatctagtcatagcggttattccaaaacaacat 13521512  T
Q  101 ccaaacaccatccaaaaatatt 122  Q
    | ||||| ||||||||||||||    
T  13521511 ctaaaca-catccaaaaatatt 13521491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 27110773 - 27110655
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatcc 102  Q
    ||||||||||||| || ||||| ||||||||||||||||||||||| ||| |  ||||  |||||||||||||| ||||||||||| |||||||| ||||    
T  27110773 aataaataagtattaatatttatttttgcggttcggttcggttttggaaaagtgatccagaatccgatccgatcttagcggtttttacaaaacaacatcc 27110674  T
Q  103 aaacaccatccaaaaatatt 122  Q
    ||||| |||||||| |||||    
T  27110673 aaaca-catccaaatatatt 27110655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 41061304 - 41061218
Alignment:
Q  20 atttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 106  Q
    ||||| ||||||| ||||||||||||||||||| | ||||| ||||||| ||||||| ||||||||||| |||||||||||||||||    
T  41061304 atttatttttgcgtttcggttcggttttgaaaaagtaatccaaaatccgttccgatcttagcggtttttacaaaacaatatccaaac 41061218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 13554857 - 13554768
Alignment:
Q  32 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    |||| |||||||||||||||| ||||| ||||||||||||  || ||||||||||||||||||||| ||||||||| |||| |||||||||    
T  13554857 ggtttggttcggttttgaaaatgcaattcgaaatccgatctaattatagcggtttttccaaaacaacatccaaaca-catctaaaaatatt 13554768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 1495912 - 1495994
Alignment:
Q  39 ttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    |||||||||||||| |  |||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||||| |||||    
T  1495912 ttcggttttgaaaaggtgatccgaaacccgatccgatcttagcggtttttacaaaacaatatccaaaca-catccaaatatatt 1495994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 33160648 - 33160518
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttt----------tgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 90  Q
    |||||||||||| || ||||| ||||||||||||||||||||||||          |||||| |  ||||||||||||| | ||||||| | ||||||||    
T  33160648 ataataaataagaattaaaatctacttttgcggttcggttcggtttggttcgattttgaaaaggtgatccgaaatccgaactgatcataacagtttttcc 33160549  T
Q  91 aaaacaatatccaaacaccatccaaaaatatt 122  Q
    |||||||  |||||||| ||||||||||||||    
T  33160548 aaaacaacctccaaaca-catccaaaaatatt 33160518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 42716110 - 42716209
Alignment:
Q  7 aataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 106  Q
    ||||||||| ||||| || |||||||||| ||||| |||||||||| | |||||||||||  |  ||||| ||||  ||||| |||||||| ||||||||    
T  42716110 aataagtattaaaatatatttttgcggtttggttcagttttgaaaaagtaatccgaaatctaaatcgatcctagctttttttacaaaacaacatccaaac 42716209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 14718291 - 14718254
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggtt 40  Q
    ||||||||||||| || |||||||||||||||||||||    
T  14718291 aataaataagtattaatatttacttttgcggttcggtt 14718254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 24575133 - 24575263
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggtt----------cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 90  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24575133 ataataaataagtataaaaatttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 24575232  T
Q  91 aaaacaatatccaaacaccatccaaaaatatt 122  Q
    ||||||| ||||||||| ||||||||||||||    
T  24575233 aaaacaacatccaaaca-catccaaaaatatt 24575263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 9280055 - 9279925
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggtt----------cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 90  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9280055 ataataaataagtataaaaatttacttttgcggttaggttaggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 9279956  T
Q  91 aaaacaatatccaaacaccatccaaaaatatt 122  Q
    ||||||| |||||||||  |||||||||||||    
T  9279955 aaaacaacatccaaaca-aatccaaaaatatt 9279925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 46251909 - 46252029
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatat 100  Q
    |||||||||||| || ||||| |||||||||||||||||||||||||||||| |  ||||||||||||| || |||||||||| ||||||||||||| ||    
T  46251909 ataataaataagaattaaaatctacttttgcggttcggttcggttttgaaaaggtgatccgaaatccgaaccaatcatagcggcttttccaaaacaacat 46252008  T
Q  101 ccaaacaccatccaaaaatatt 122  Q
    ||||||| ||||||||||||||    
T  46252009 ccaaaca-catccaaaaatatt 46252029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 7700411 - 7700297
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggtt----------cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 90  Q
    |||||||||||||||||||||||||||||| ||||          |||||| ||||||||||||||||| ||||| |||||||||||||||||||||||     
T  7700411 ataataaataagtataaaaatttacttttgtggtttggtttggttcggttcagttttgaaaacgcaatctgaaattcgatccgatcatagcggtttttct 7700312  T
Q  91 aaaacaatatccaaa 105  Q
    ||||||| |||||||    
T  7700311 aaaacaacatccaaa 7700297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 47498856 - 47498946
Alignment:
Q  31 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    ||||||||||||||||| |||| |  ||||||||||||| || |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  47498856 cggttcggttcggttttaaaaaggtgatccgaaatccgaaccaatcatagcggtttttccaaaacaacatccaaaca-catccaaaaatatt 47498946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 34277066 - 34276963
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatcc 102  Q
    ||||||||||||| || ||||| ||||||||||||||||| ||||||||| |  ||||  ||| |||||||||| ||||||||||| |||||||| ||||    
T  34277066 aataaataagtattaatatttatttttgcggttcggttcgattttgaaaaagtgatccagaattcgatccgatcttagcggtttttacaaaacaacatcc 34276967  T
Q  103 aaac 106  Q
    ||||    
T  34276966 aaac 34276963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 18780905 - 18781035
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggtt----------ttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 90  Q
    |||||||||||||||||||||||||||||||||||  |||  |||          ||||||||| ||| ||||||| |||| ||||||| ||||||||||    
T  18780905 ataataaataagtataaaaatttacttttgcggtttagtttagttcgattttattttgaaaacgtaattcgaaatctgatctgatcataacggtttttcc 18781004  T
Q  91 aaaacaatatccaaacaccatccaaaaatatt 122  Q
    ||||||| || |||||| ||||||||||||||    
T  18781005 aaaacaaaattcaaaca-catccaaaaatatt 18781035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 42414565 - 42414640
Alignment:
Q  31 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 106  Q
    ||||| |||||||||||||||| |  |||| ||||||||||||||| ||||||||||| |||||||| ||||||||    
T  42414565 cggtttggttcggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaac 42414640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 40436560 - 40436458
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatcc 102  Q
    ||||||||| ||| || ||||||||||||||||||||| ||||||||||| |  ||||||| ||||||| |||| || |  ||||| |||||||| ||||    
T  40436560 aataaataaatattaatatttacttttgcggttcggtttggttttgaaaaagtgatccgaagtccgatctgatcgtaacaatttttacaaaacaacatcc 40436461  T
Q  103 aaa 105  Q
    |||    
T  40436460 aaa 40436458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 56078554 - 56078452
Alignment:
Q  4 ataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatcca 103  Q
    |||||||||||| |||||||||||||| ||||  ||||||||||||||| |  ||  ||||||||||||||||| | |  ||||| | |||||| |||||    
T  56078554 ataaataagtattaaaatttacttttgtggttttgttcggttttgaaaaagtgatttgaaatccgatccgatcacaacaatttttactaaacaacatcca 56078455  T
Q  104 aac 106  Q
    |||    
T  56078454 aac 56078452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 42430112 - 42430004
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttt-----tgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaa 97  Q
    ||||||||||||| || ||||| ||||||| ||||||| |||||     |||||| |  ||||||||| ||||||||||  |||||||||| ||||||||    
T  42430112 aataaataagtattaatatttatttttgcgtttcggtttggtttggttttgaaaaagtgatccgaaattcgatccgatctgagcggtttttacaaaacaa 42430013  T
Q  98 tatccaaac 106  Q
     ||||||||    
T  42430012 catccaaac 42430004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 3757053 - 3756978
Alignment:
Q  31 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 106  Q
    ||||| |||||||||||||||| |  |||||||||||||||||||| || ||||||||  ||||||| || |||||    
T  3757053 cggtttggttcggttttgaaaaagtgatccgaaatccgatccgatcttaacggtttttaaaaaacaacattcaaac 3756978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 47997031 - 47997095
Alignment:
Q  57 atccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    |||||||||||||||||||| ||||||||||| |||||||| || ||| || |||| |||||||||    
T  47997031 atccgaaatccgatccgatcctagcggtttttacaaaacaacattcaagca-catcgaaaaatatt 47997095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 24859100 - 24859057
Alignment:
Q  29 tgcggttcggttcggttttgaaaacgcaatccgaaatccgatcc 72  Q
    ||||||||||||||||||||||||  |||||| |||||||||||    
T  24859100 tgcggttcggttcggttttgaaaaatcaatccaaaatccgatcc 24859057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 6184090 - 6184152
Alignment:
Q  43 gttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaa 105  Q
    |||||||||| |  |||||||||||||||||||| || || ||||| |||||||| |||||||    
T  6184090 gttttgaaaaagtgatccgaaatccgatccgatcctaacgatttttacaaaacaacatccaaa 6184152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 31938702 - 31938653
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttttgaaaa 52  Q
    ||||||||||||| ||||||||| |||| |||| |||||| |||||||||    
T  31938702 aataaataagtattaaaatttacatttgtggtttggttcgattttgaaaa 31938653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 16705343 - 16705456
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| ||    
T  16705343 ataataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgc-------aatccgatccgatcatagcggtttttccaaaacaacat 16705435  T
Q  101 ccaaacaccatccaaaaatatt 122  Q
    ||||||| ||||||||||||||    
T  16705436 ccaaaca-catccaaaaatatt 16705456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 7608258 - 7608388
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggtt----------cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 90  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608258 ataataaataagtataaaaatttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 7608357  T
Q  91 aaaacaatatccaaacaccatccaaaaatatt 122  Q
    ||||||| |||||||||  |||||||||||||    
T  7608358 aaaacaacatccaaaca-aatccaaaaatatt 7608388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 21946799 - 21946710
Alignment:
Q  32 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    |||| ||||||||||||||||    ||||||||||||| || || ||||||||||||||||||||| ||||||||| |||| |||||||||    
T  21946799 ggtttggttcggttttgaaaagctgatccgaaatccgaaccaattatagcggtttttccaaaacaacatccaaaca-catcaaaaaatatt 21946710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 10484386 - 10484472
Alignment:
Q  23 tacttttgcggttcggttcgg---ttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 106  Q
    |||||||||||||| ||||||   |||||| || |||||||||||||| ||||||||||||||||||||  || |||| ||||||||    
T  10484386 tacttttgcggttcagttcggcagttttgagaaagcaatccgaaatccaatccgatcatagcggtttttagaagacaacatccaaac 10484472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 3901117 - 3901240
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggt-----tcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaa 97  Q
    |||||||||||||  | |||||||||||||||     ||||||||||||| |||| |  ||||||| ||| ||| |||| | ||||||||  ||||||||    
T  3901117 aataaataagtattcacatttacttttgcggttcggttcggttcggttttaaaaaagtgatccgaagtccaatctgatcttggcggttttggcaaaacaa 3901216  T
Q  98 tatccaaacaccatccaaaaatatt 122  Q
     ||||||||| ||||||||||||||    
T  3901217 catccaaaca-catccaaaaatatt 3901240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 10386261 - 10386171
Alignment:
Q  10 aagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatcc 102  Q
    |||||| || |||||||||||||||| || ||||||||||||| |  ||||||||||||||  |||| ||||||||||| |||||||| ||||    
T  10386261 aagtattaatatttacttttgcggtt-ggatcggttttgaaaa-gtgatccgaaatccgatatgatcctagcggtttttacaaaacaacatcc 10386171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 33747990 - 33747895
Alignment:
Q  3 aataaataagtataaaaatttactttt-gcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaa 97  Q
    ||||||||||||| || || ||||||| ||||||| ||| ||||||||||| || |||||||||  ||||| ||| ||||| ||| | ||||||||    
T  33747990 aataaataagtattaatatgtactttttgcggttcagttaggttttgaaaaagctatccgaaatatgatccaatcttagcgctttctacaaaacaa 33747895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10517600 - 10517645
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttt 46  Q
    |||||||||||| || ||||||||||||||||||| ||||| ||||    
T  10517600 ataataaataagaattaaaatttacttttgcggtttggttcagttt 10517645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 37282623 - 37282737
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggtt----------cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 90  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37282623 ataataaataagtataaaaatttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 37282722  T
Q  91 aaaacaatatccaaa 105  Q
    ||||||| |||||||    
T  37282723 aaaacaacatccaaa 37282737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 19636524 - 19636638
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggtt----------cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 90  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  19636524 ataataaataagtataaaaatttacttttgcggttgggtttggttcggttcggttttgaaaactcaatccgaaatccgatccgatcatcgcggcttttcc 19636623  T
Q  91 aaaacaatatccaaa 105  Q
    ||||||| |||||||    
T  19636624 aaaacaacatccaaa 19636638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 32055893 - 32055977
Alignment:
Q  37 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    |||||||||||||||| |  ||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  32055893 ggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaaca-catccaaaaatatt 32055977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 25706392 - 25706301
Alignment:
Q  31 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggt-ttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    ||||| |||||||||||||||| |  ||| ||| ||||| |||||||||||||| |||| |||||||| ||||||||| ||||||||||||||    
T  25706392 cggtttggttcggttttgaaaaggttatctgaagtccgaaccgatcatagcggtttttttcaaaacaacatccaaaca-catccaaaaatatt 25706301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 1030551 - 1030476
Alignment:
Q  31 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 106  Q
    ||||| |||||||||| ||||| |  |||| ||||||||||||||| ||||||||||| |||||||| ||||||||    
T  1030551 cggtttggttcggtttcgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaac 1030476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 39717244 - 39717312
Alignment:
Q  37 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaa 105  Q
    ||||||||||| |||| |  |||| |||||||| |||||||||||||||||||||| |||| |||||||    
T  39717244 ggttcggttttcaaaaggtgatccaaaatccgaaccgatcatagcggtttttccaatacaacatccaaa 39717312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48973718 - 48973762
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggtt 45  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||    
T  48973718 ataataaataagtataaaaatttacttttgcagttcggtttggtt 48973762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 48085299 - 48085390
Alignment:
Q  17 aaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacac 108  Q
    ||||| ||||||||||||| |||||||||||||||| |  ||||||||||||||  |||   | || ||||| |||||||| ||||||||||    
T  48085299 aaaatatacttttgcggtttggttcggttttgaaaaagtgatccgaaatccgatttgataccatcgctttttacaaaacaacatccaaacac 48085390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 29283123 - 29283081
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggtt 45  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  29283123 aataaataagtattaatatttacttttgcggttcggttcggtt 29283081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25706432 - 25706387
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttt 46  Q
    |||||||||||| || ||||| ||||||||||||||||||||||||    
T  25706432 ataataaataagaattaaaatctacttttgcggttcggttcggttt 25706387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 16672143 - 16672012
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggtt----------cggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttcc 90  Q
    ||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16672143 ataataaataagtataaaaatttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcagtttttcc 16672044  T
Q  91 aaaacaatatccaa-acaccatccaaaaatatt 122  Q
    ||||||| |||||| ||| ||||||||||||||    
T  16672043 aaaacaacatccaacaca-catccaaaaatatt 16672012  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 21352298 - 21352401
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatcc 102  Q
    ||||||||||||| || ||||| |||||||| ||||| |||||||||||| |  |||| ||||||||||||||| ||||||||||| |||||||| ||||    
T  21352298 aataaataagtattaatatttatttttgcggctcggtacggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatcc 21352397  T
Q  103 aaac 106  Q
    ||||    
T  21352398 aaac 21352401  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 22596198 - 22596099
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcg-----gttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaa 97  Q
    ||||||||||||| || ||||| ||||||||||||     ||| ||||||||||| |  ||||||||||||||| |||| ||||| ||||| ||||||||    
T  22596198 aataaataagtattaatatttatttttgcggttcgttttggtttggttttgaaaaagtgatccgaaatccgatctgatcttagcgatttttacaaaacaa 22596099  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18511680 - 18511635
Alignment:
Q  1 ataataaataagtataaaaatttacttttgcggttcggttcggttt 46  Q
    |||||||||||| || ||||| ||||||||||||||||||||||||    
T  18511680 ataataaataagaattaaaatctacttttgcggttcggttcggttt 18511635  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 10997365 - 10997252
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatcc 102  Q
    |||||||| |||| || |||||||||| ||||||||||||||||||| || |  |||  |||| |||| |     || |||||||| |||||||| ||||    
T  10997365 aataaatatgtattaatatttacttttacggttcggttcggttttgagaaagtgatctaaaattcgattc-----taacggtttttacaaaacaacatcc 10997271  T
Q  103 aaacaccatccaaaaatatt 122  Q
    ||||| ||||||||||||||    
T  10997270 aaaca-catccaaaaatatt 10997252  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 15441253 - 15441159
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaa 97  Q
    ||||||||| ||| || ||||| |||| |||||| ||| ||||||||||| |  |||||||||| |||| |||| ||||| ||| | ||||||||    
T  15441253 aataaataaatattaatatttattttttcggttcagtttggttttgaaaaagtgatccgaaatctgatctgatcctagcgatttatacaaaacaa 15441159  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 18511614 - 18511557
Alignment:
Q  64 atccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 122  Q
    |||||| || || ||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  18511614 atccgaaccaattatagcggttttgccaaaacaacatccaaaca-catccaaaaatatt 18511557  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 34439954 - 34439868
Alignment:
Q  7 aataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaa 93  Q
    ||||| ||| ||||| ||| | ||| ||| |||||||||||||||| | |||||| |||||||||| ||  ||||||||||| ||||    
T  34439954 aataaatattaaaatatacatatgcagtttggttcggttttgaaaaagtaatccggaatccgatccaattctagcggtttttacaaa 34439868  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 7418246 - 7418197
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttttgaaaa 52  Q
    ||||||||||||| | ||||||||||||||||| | |||| |||||||||    
T  7418246 aataaataagtattagaatttacttttgcggtttgattcgattttgaaaa 7418197  T

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Target: scaffold0034 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 47761 - 47862
Alignment:
Q  20 atttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaat 119  Q
    ||||||||||||| || | ||||||||||| || |  ||||||||||||||| |||||||||| ||||| |||||||| ||||||||| |||||| ||||    
T  47761 atttacttttgcgatttgattcggttttgagaaagtgatccgaaatccgatctgatcatagcgatttttacaaaacaacatccaaaca-catccacaaat 47859  T
Q  120 att 122  Q
    |||    
T  47860 att 47862  T

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Target: scaffold0140 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 15608 - 15505
Alignment:
Q  3 aataaataagtataaaaatttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatcc 102  Q
    ||||||||||| | || |||||||||| |||| ||||| ||||||||||| |  ||||||||||  |||||||| ||||  ||||| |||||||| | ||    
T  15608 aataaataagtgtcaatatttacttttacggtccggtttggttttgaaaaagttatccgaaatctaatccgatcctagctatttttacaaaacaacaacc 15509  T
Q  103 aaac 106  Q
    ||||    
T  15508 aaac 15505  T

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Target: scaffold0396 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 1290 - 1356
Alignment:
Q  39 ttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaa 105  Q
    |||| ||||||||| |  |||||||||||||| ||||| ||||||| ||| ||||||||||||||||    
T  1290 ttcgattttgaaaaagtgatccgaaatccgattcgatcttagcggtgtttacaaaacaatatccaaa 1356  T

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