View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17983_low_16 (Length: 206)

Name: NF17983_low_16
Description: NF17983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17983_low_16
NF17983_low_16
[»] chr1 (9 HSPs)
chr1 (80-189)||(18423622-18423731)
chr1 (80-189)||(18437887-18437996)
chr1 (80-189)||(18448745-18448854)
chr1 (80-189)||(18453838-18453947)
chr1 (128-189)||(18420215-18420276)
chr1 (128-189)||(18433729-18433790)
chr1 (87-190)||(18408207-18408305)
chr1 (86-189)||(18410085-18410183)
chr1 (86-156)||(18429238-18429308)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 18423731 - 18423622
Alignment:
Q  80 ttcttttatcatttaataaaaacgtgaacgttaatatcatatgactggctgcaatagttatgatttgttatccaatgactgtctggagcgattaaagagg 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18423731 ttcttttatcatttaataaaaacgtgaacgttaatatcatatgactggctgcaatagttatgatttgttatccaatgactgtttggagcgattaaagagg 18423632  T
Q  180 aaggaagagg 189  Q
    ||||||||||    
T  18423631 aaggaagagg 18423622  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 18437996 - 18437887
Alignment:
Q  80 ttcttttatcatttaataaaaacgtgaacgttaatatcatatgactggctgcaatagttatgatttgttatccaatgactgtctggagcgattaaagagg 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||   ||||| |||||||||||    
T  18437996 ttcttttatcatttaataaaaacttgaacgttaatatcatatgactggctgcaatagttatgatttgctatccaatggctacttggagtgattaaagagg 18437897  T
Q  180 aaggaagagg 189  Q
    ||||||||||    
T  18437896 aaggaagagg 18437887  T

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Target: chr1; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 18448854 - 18448745
Alignment:
Q  80 ttcttttatcatttaataaaaacgtgaacgttaatatcatatgactggctgcaatagttatgatttgttatccaatgactgtctggagcgattaaagagg 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||   ||||| |||||||||||    
T  18448854 ttcttttatcatttaataaaaacttgaacgttaatatcatatgactggctgcaatagttatgatttgctatccaatggctacttggagtgattaaagagg 18448755  T
Q  180 aaggaagagg 189  Q
    ||||||||||    
T  18448754 aaggaagagg 18448745  T

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Target: chr1; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 18453947 - 18453838
Alignment:
Q  80 ttcttttatcatttaataaaaacgtgaacgttaatatcatatgactggctgcaatagttatgatttgttatccaatgactgtctggagcgattaaagagg 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||   ||||| |||||||||||    
T  18453947 ttcttttatcatttaataaaaacttgaacgttaatatcatatgactggctgcaatagttatgatttgctatccaatggctacttggagtgattaaagagg 18453848  T
Q  180 aaggaagagg 189  Q
    ||||||||||    
T  18453847 aaggaagagg 18453838  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 18420276 - 18420215
Alignment:
Q  128 ctgcaatagttatgatttgttatccaatgactgtctggagcgattaaagaggaaggaagagg 189  Q
    ||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  18420276 ctgcaattgttatgatttgttatccaatgactatttggagcgattaaagaggaaggaagagg 18420215  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 18433790 - 18433729
Alignment:
Q  128 ctgcaatagttatgatttgttatccaatgactgtctggagcgattaaagaggaaggaagagg 189  Q
    ||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  18433790 ctgcaatagttatgatttgttgtccaatgactatttggagcgattaaagaggaaggaagagg 18433729  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 18408305 - 18408207
Alignment:
Q  87 atcatttaataaaaacgtgaacgttaatatcatatgactggctgcaatagttatgatttgttatccaatgactgtctggagcgattaaagaggaaggaag 186  Q
    |||||||||||||||| | ||||||||||||||||| ||||    ||||||||||||||||||| |||||  ||| |||||  |||||||||||||||||    
T  18408305 atcatttaataaaaactt-aacgttaatatcatatggctgg----aatagttatgatttgttatgcaatggatgtttggagatattaaagaggaaggaag 18408211  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 18410183 - 18410085
Alignment:
Q  86 tatcatttaataaaaacgtgaacgttaatatcatatgactggctgcaatagttatgatttgttatccaatgactgtctggagcgattaaagaggaaggaa 185  Q
    |||||||||||| |||| | ||||||| |||||||||  |||| |||| ||||||| |||||||||||||| |      ||| |||||||||||||||||    
T  18410183 tatcatttaatataaactttaacgttagtatcatatggttggcggcaacagttatgttttgttatccaatggc-----cgagtgattaaagaggaaggaa 18410089  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 18429308 - 18429238
Alignment:
Q  86 tatcatttaataaaaacgtgaacgttaatatcatatgactggctgcaatagttatgatttgttatccaatg 156  Q
    |||||||||||| |||| | ||||||| |||||||||  |||| |||| ||||||| ||||||||||||||    
T  18429308 tatcatttaatataaactttaacgttagtatcatatggttggcggcaacagttatgttttgttatccaatg 18429238  T

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