View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17983_low_4 (Length: 435)
Name: NF17983_low_4
Description: NF17983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17983_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Complemental strand, 41475329 - 41474911
Alignment:
| Q |
17 |
aaaacgagagaatgtgtgagaagatgaagaaaacgaaaccctaacaaaattttctcgaaatggaaatgaaaatgatttatgaatgtgtgaaaagaaaatt |
116 |
Q |
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| T |
41475329 |
aaaacgagagaatgtgtgagaagatgaagaaaacgaaaccctaacaaaattttctcgaaatggaaatgaaaatgatttatgaatgtgtgaaaagaaaatt |
41475230 |
T |
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| Q |
117 |
ttctggtttaggtaataaataaaaactgacactagaaaatgatgaaacggtgtcgtttgcgtgatgaattagaaaaaagagggtttttgaatttggtgaa |
216 |
Q |
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| T |
41475229 |
ttctggtttaggtaataaataaaaactgacactagaaaatgatgaaacggtgtcgtttgcgtgatgaattagaaaaaagagggtttttgaatttggtgaa |
41475130 |
T |
|
| Q |
217 |
gga-----tttgttgttgagttttacaggtaaacgagaaattctgcgcaacgcggaggaaataaacgtgacctcacctgggtacttcttcactaaggata |
311 |
Q |
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| T |
41475129 |
ggatttgatttgttgttgagttttacaggtaaacgagaaattctgcgcaacgcagaggaaataaacgtgaactcacctgggtacttcttcactaaggata |
41475030 |
T |
|
| Q |
312 |
cacaaatattcattcatatctatatgcagttcttatagtattgtacatactatacactaattatcacatgacacgtggaaattcaaacaataaaactaat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41475029 |
cacaaatattcattcatatctatatgcagttcttatagtattgtacatactatacactaattatcacatgacacgtggaaattcaaacaataaaactaat |
41474930 |
T |
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| Q |
412 |
tttctctcttcatctctct |
430 |
Q |
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||||||||||||| ||||| |
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| T |
41474929 |
tttctctcttcatttctct |
41474911 |
T |
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