View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17983_low_5 (Length: 327)
Name: NF17983_low_5
Description: NF17983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17983_low_5 |
 | |
|
| [»] scaffold0442 (1 HSPs) |
| | |
|
| [»] scaffold0167 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 8211148 - 8211444
Alignment:
| Q |
16 |
gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
8211148 |
gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagcagttttatgtggttccat |
8211247 |
T |
|
| Q |
116 |
aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttgaannnnnnnccattaattaaactctgcagaattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8211248 |
aatttttcccaagagagacaaacaattgaaggagcatcgaggttagaagtttttataatttgtttgaatttttttccattaattaaactctgcagaattt |
8211347 |
T |
|
| Q |
216 |
tgaatgtatgtttcactctcaatttcaatctattttaattaacgttttcattctaatgttgcagtacactctcatttgctggttgcacaatcttact |
312 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8211348 |
tgactgtatgtttcactctcaatttcaatctattttaattaacgttttcattctaatgttgcaatacactctcatttgctggttgcacaatcttact |
8211444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 9289388 - 9289684
Alignment:
| Q |
16 |
gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
9289388 |
gtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattcataaatcaatcccacttagaattgagcagttttatgcggttccac |
9289487 |
T |
|
| Q |
116 |
aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttgaannnnnnnccattaattaaactctgcagaattt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9289488 |
aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttataatttgtttgaatttttttccattaattaaactctgcagaattt |
9289587 |
T |
|
| Q |
216 |
tgaatgtatgtttcactctcaatttcaatctattttaattaacgttttcattctaatgttgcagtacactctcatttgctggttgcacaatcttact |
312 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9289588 |
tgactgtatgtttcactctcaatttcaatctattttaattaacattttcattctaatgttgcaatacactctcatttgctggttgcacaatcttact |
9289684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 51423576 - 51423864
Alignment:
| Q |
16 |
gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac |
115 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
51423576 |
gtaacctattttacttcccattttactataaactaaaatgttattgttgctattaataaatcaatcccacttagaattgagcagttttatgcggttccac |
51423675 |
T |
|
| Q |
116 |
aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttgaannnnnnnccattaattaaactctgcagaattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||| ||||||| |
|
|
| T |
51423676 |
aatttttcccaagagagacaaacaattgaaggagcatccaggttagaagtttttataatttgtttgaa-ttttttctattaattaaactctgtagaattt |
51423774 |
T |
|
| Q |
216 |
tgaatgtatgtttcactctcaatttcaatctattttaattaacgttttcattctaatgttgcagtacactctcatttgctggttgcacaa |
305 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51423775 |
tgactgtatgtttcactctcaatttcaatttattttaattaacgttttcattctaatgttgcaatacactctcatttgctggttgcacaa |
51423864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 11685194 - 11685472
Alignment:
| Q |
16 |
gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11685194 |
gtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaatcccac------------------atgcggttccac |
11685275 |
T |
|
| Q |
116 |
aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttgaannnnnnnccattaattaaactctgcagaattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
11685276 |
aatttttcccaagagagacaaacaattgaaggagcatcgaggttagaagtttttataatttgtttgaatttttttccattaattagactctgcagaattt |
11685375 |
T |
|
| Q |
216 |
tgaatgtatgtttcactctcaatttcaatctattttaattaacgttttcattctaatgttgcagtacactctcatttgctggttgcacaatcttact |
312 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
11685376 |
tgactctatgtttcactctcaatttcaatctattttaattaacgttttcattctaatgttgcaatacactctcatttgctggttacacaatcttact |
11685472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 32060229 - 32060277
Alignment:
| Q |
16 |
gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttg |
64 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32060229 |
gtaacctattttacttcccattttatcgtaaactaaaatgtcattgttg |
32060277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 12840830 - 12840780
Alignment:
| Q |
16 |
gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgct |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
12840830 |
gtaacctattttacttcccattttaccgtaagctaaaatgccattgttgct |
12840780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 14463620 - 14463324
Alignment:
| Q |
16 |
gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
14463620 |
gtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaaacccacttagaattgagcagttttatgcggttccac |
14463521 |
T |
|
| Q |
116 |
aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttgaannnnnnnccattaattaaactctgcagaattt |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| || || ||||||||||||| |||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
14463520 |
aatttttcctaagagagacaaacaattgaaggagaatagagattagaagtttttataatttgtttgaatttttttccattaattaaactatgcagaattt |
14463421 |
T |
|
| Q |
216 |
tgaatgtatgtttcactctcaatttcaatctattttaattaacgttttcattctaatgttgcagtacactctcatttgctggttgcacaatcttact |
312 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
14463420 |
tgagtgtatgtttcactctcaatttcaatctattttaattaacattttcattctaatgttgcaatacgctctcatttgctggttgcacaattttact |
14463324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 7055799 - 7055505
Alignment:
| Q |
16 |
gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
7055799 |
gtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaaacccacttagaattgagcagttttatgcggttccac |
7055700 |
T |
|
| Q |
116 |
aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttgaannnnnnnccattaattaaactctgcagaattt |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7055699 |
aatttttcctaagagagacaaacaattgaaggagaatagaggttagaagtttttataatttgtttgaatttttttccattaattaaactctgcagaattt |
7055600 |
T |
|
| Q |
216 |
tgaatgtatgtttcactctcaatttcaatctattttaattaacgttttcattctaatgttgcagtacactctcatttgctggttgcacaatcttact |
312 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || ||||||| | ||||||||||||||||| |
|
|
| T |
7055599 |
tgagtgtatgtttcactctcaatttcaatctattttaattaacattttcattctaatgttgca--atacgctcatttaccggttgcacaatcttact |
7055505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 13588 - 13293
Alignment:
| Q |
16 |
gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
13588 |
gtaacatattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaaacccaattagaattgagcagttttatgcagttccac |
13489 |
T |
|
| Q |
116 |
aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttgaannnnnnnccattaattaaactctgcagaattt |
215 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| || ||||||| |||||||| ||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
13488 |
aatttttcctaagagagacaaacaattcaaggagaatagaggttaggagtttttataatttgttttaa-ttttttccattaattaaactctgcagaattt |
13390 |
T |
|
| Q |
216 |
tgaatgtatgtttcactctcaatttcaatctattttaattaacgttttcattctaatgttgcagtacactctcatttgctggttgcacaatcttact |
312 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
13389 |
tgactgtatgtttcactctcaatttcaatctattttaattaacgttttcattctaatgttgcaatacgctctcatttgtcggttgcacaatcttact |
13293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 38979329 - 38979628
Alignment:
| Q |
16 |
gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
38979329 |
gtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaaacccacttagaattgagcagttttatgcggttccac |
38979428 |
T |
|
| Q |
116 |
aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttga---annnnnnnccattaattaaactctgcagaa |
212 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
38979429 |
agtttttcctaagagagacaaacaattgaaggagaatagaggttagaagtttttataatttgtttgatattttttttttcattaattaaactctgcagaa |
38979528 |
T |
|
| Q |
213 |
ttttgaatgtatgtttcactctcaatttcaatctattttaattaacgttttcattctaatgttgcagtacactctcatttgctggttgcacaatcttact |
312 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| | | ||||||||||||||| |
|
|
| T |
38979529 |
ttttgagtgtatgtttcactttcaatttcaatctattttaattaacattttcattctaatgttgcaatacattctcattttccgattgcacaatcttact |
38979628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0167 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0167
Description:
Target: scaffold0167; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 20373 - 20221
Alignment:
| Q |
16 |
gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
20373 |
gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaaatccacttagaattgagcagttttatgcggttccac |
20274 |
T |
|
| Q |
116 |
aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagttttta |
170 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||| || |||||||||||||||| |
|
|
| T |
20273 |
aatttttccta--agagacaaacaattgaatgagaatagaggttagaagttttta |
20221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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