View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17983_low_6 (Length: 321)

Name: NF17983_low_6
Description: NF17983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17983_low_6
NF17983_low_6
[»] chr4 (12 HSPs)
chr4 (1-307)||(36429270-36429576)
chr4 (58-307)||(36376225-36376474)
chr4 (68-307)||(36407115-36407354)
chr4 (58-307)||(36435723-36435972)
chr4 (75-307)||(36399658-36399890)
chr4 (70-307)||(36419277-36419514)
chr4 (2-307)||(36389469-36389775)
chr4 (75-247)||(36370513-36370685)
chr4 (68-232)||(36412313-36412477)
chr4 (249-307)||(36370433-36370491)
chr4 (121-165)||(40823841-40823885)
chr4 (122-166)||(48476691-48476735)
[»] chr2 (2 HSPs)
chr2 (123-241)||(2662470-2662588)
chr2 (123-167)||(2682025-2682069)
[»] chr8 (7 HSPs)
chr8 (141-208)||(15697353-15697420)
chr8 (124-205)||(15799843-15799924)
chr8 (141-213)||(15692677-15692749)
chr8 (124-208)||(15703715-15703799)
chr8 (124-204)||(15722546-15722626)
chr8 (141-205)||(15805392-15805456)
chr8 (201-271)||(23560564-23560634)
[»] chr3 (1 HSPs)
chr3 (75-166)||(13855176-13855267)
[»] scaffold0090 (1 HSPs)
scaffold0090 (129-166)||(8284-8321)
[»] chr1 (2 HSPs)
chr1 (129-166)||(47607375-47607412)
chr1 (123-163)||(47287663-47287703)
[»] chr7 (6 HSPs)
chr7 (121-165)||(20168090-20168134)
chr7 (121-165)||(20231557-20231601)
chr7 (121-165)||(20243622-20243666)
chr7 (121-165)||(20264016-20264060)
chr7 (121-165)||(20279525-20279569)
chr7 (129-165)||(20289266-20289302)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 36429576 - 36429270
Alignment:
Q  1 gctgcaattattcaaaatagttagagaacatggtgacatttctataatcatgctgaatataaggatatgacacctactatgttccgaccactctttttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36429576 gctgcaattattcaaaatagttagagaacatggtgacatttctataatcatgctgaatataaggatatgacacctactatgttccgaccactctttttgt 36429477  T
Q  101 tcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36429476 tcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttaga 36429377  T
Q  201 tctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttcaaaacgctttacccaatccaatgacg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36429376 tctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttcaaaacgctttacccaatccaatgacg 36429277  T
Q  301 acctttg 307  Q
    |||||||    
T  36429276 acctttg 36429270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 58 - 307
Target Start/End: Complemental strand, 36376474 - 36376225
Alignment:
Q  58 tataaggatatgacacctactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagatttt 157  Q
    ||||||| | ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36376474 tataagggtgtgaaacatactatgttccaaccactctttttgttcttgcttgtatttcatcttctccaaatattctagccataccaaaatctgagatttt 36376375  T
Q  158 gggattcattgcagcatcgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagca 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36376374 gggattcattgcagcatcgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagca 36376275  T
Q  258 atcccacaaataatttcaaaacgctttacccaatccaatgacgacctttg 307  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  36376274 atcccacaaataatttcaaaacgctttccccaatccaatgatgacctttg 36376225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 68 - 307
Target Start/End: Complemental strand, 36407354 - 36407115
Alignment:
Q  68 tgacacctactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcatt 167  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36407354 tgacacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcatt 36407255  T
Q  168 gcagcatcgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaa 267  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36407254 gcagcgtcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataaaacacctcgagcaatcccacaaa 36407155  T
Q  268 taatttcaaaacgctttacccaatccaatgacgacctttg 307  Q
    | ||||||||||||||||||||||||||||| ||||||||    
T  36407154 tgatttcaaaacgctttacccaatccaatgatgacctttg 36407115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 58 - 307
Target Start/End: Complemental strand, 36435972 - 36435723
Alignment:
Q  58 tataaggatatgacacctactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagatttt 157  Q
    ||||||| ||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36435972 tataagggtatgaaacatactatgttccaaccactctttttgttcttgcttgtatttcatcttctccaaatattctagccataccaaaatctgagatttt 36435873  T
Q  158 gggattcattgcagcatcgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagca 257  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36435872 gggattcattgcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagca 36435773  T
Q  258 atcccacaaataatttcaaaacgctttacccaatccaatgacgacctttg 307  Q
    || |||||||||||||||||||||||  ||||||||||| | ||||||||    
T  36435772 atgccacaaataatttcaaaacgcttaccccaatccaataatgacctttg 36435723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 75 - 307
Target Start/End: Complemental strand, 36399890 - 36399658
Alignment:
Q  75 tactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcat 174  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  36399890 tactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaatctgagattttgggattcatttcagcat 36399791  T
Q  175 cgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttc 274  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  36399790 caaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataaaacacctcgagcaatgccacaaataatttc 36399691  T
Q  275 aaaacgctttacccaatccaatgacgacctttg 307  Q
    |||||||||  ||||||||||||| ||||||||    
T  36399690 aaaacgcttaccccaatccaatgatgacctttg 36399658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 70 - 307
Target Start/End: Complemental strand, 36419514 - 36419277
Alignment:
Q  70 acacctactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgc 169  Q
    |||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  36419514 acacatactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccataccaaaatccgagattttgggattcattac 36419415  T
Q  170 agcatcgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaata 269  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36419414 agcatcaaggagaacgttgctggcttttagatctctatggattattttcagccttgaatcttgatgaagatataatacacctcgagcaatcccacaaata 36419315  T
Q  270 atttcaaaacgctttacccaatccaatgacgacctttg 307  Q
    |||||||||||| | |||||||||||||| ||||||||    
T  36419314 atttcaaaacgcgtaacccaatccaatgatgacctttg 36419277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 36389775 - 36389469
Alignment:
Q  2 ctgcaattattcaaaatagttagagaacatggtgacatttctataatcatgctgaatataaggatatgacacctactatgttccgaccactctttttgtt 101  Q
    ||||||||||   |||| ||||||||| |||||||||| | |||||||||| ||||||||||| ||||| || ||||||||||| |||||||||||||||    
T  36389775 ctgcaattataggaaattgttagagaatatggtgacatctatataatcatggtgaatataagggtatgagacatactatgttccaaccactctttttgtt 36389676  T
Q  102 cttgcttgaatttcatcttc---tccaaatattctagccataccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggctttta 198  Q
     ||||||| |||||||| ||   |||||||||||||||||||||||||||||||||||| || ||||||||||| || |||||||| |||||||||||||    
T  36389675 attgcttggatttcatcatcgtctccaaatattctagccataccaaaatctgagattttagggttcattgcagcgtcaaggagaacattgctggctttta 36389576  T
Q  199 gatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttcaaaacgctttacccaatccaatga 298  Q
    | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| ||  |||||||||||||    
T  36389575 ggtctctatgaatgattttcagccttgaatcttgatgaagatataaaacgcctcgagcaatcccac--ataatttcaaaacgtttgccccaatccaatga 36389478  T
Q  299 cgacctttg 307  Q
     ||||||||    
T  36389477 tgacctttg 36389469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 75 - 247
Target Start/End: Complemental strand, 36370685 - 36370513
Alignment:
Q  75 tactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcat 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36370685 tactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcatttcagcat 36370586  T
Q  175 cgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaac 247  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36370585 caaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataaaac 36370513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 68 - 232
Target Start/End: Complemental strand, 36412477 - 36412313
Alignment:
Q  68 tgacacctactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcatt 167  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36412477 tgacacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcatt 36412378  T
Q  168 gcagcatcgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttg 232  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36412377 gcagcgtcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttg 36412313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 36370491 - 36370433
Alignment:
Q  249 cctcgagcaatcccacaaataatttcaaaacgctttacccaatccaatgacgacctttg 307  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||    
T  36370491 cctcgagcaatcacacaaataatttcaaaacgcttaacccaatccaatgatgacctttg 36370433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 40823841 - 40823885
Alignment:
Q  121 ctccaaatattctagccataccaaaatctgagattttgggattca 165  Q
    ||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  40823841 ctccaaagattctagccataccaaagtctgatatttttggattca 40823885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 48476691 - 48476735
Alignment:
Q  122 tccaaatattctagccataccaaaatctgagattttgggattcat 166  Q
    |||||| ||||||||||||||||||||||| || || ||||||||    
T  48476691 tccaaaaattctagccataccaaaatctgaaatcttaggattcat 48476735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 2662470 - 2662588
Alignment:
Q  123 ccaaatattctagccataccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctctatgaattattttcagcc 222  Q
    ||||| ||||| ||||| ||||| || || ||||| ||||||||| |  |||| |  ||||| ||||| |||||||||||||||||||||||| | || |    
T  2662470 ccaaacattcttgccattccaaagtcagaaatttttggattcatttcgccatctaaaagaacattgcttgcttttagatctctatgaattattcttagtc 2662569  T
Q  223 ttgaatcttgatgaagata 241  Q
    ||||||||  |||||||||    
T  2662570 ttgaatctctatgaagata 2662588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 2682025 - 2682069
Alignment:
Q  123 ccaaatattctagccataccaaaatctgagattttgggattcatt 167  Q
    ||||||||||||||||| ||||| ||||| ||||| |||||||||    
T  2682025 ccaaatattctagccatcccaaagtctgatatttttggattcatt 2682069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 15697353 - 15697420
Alignment:
Q  141 ccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctctatg 208  Q
    ||||||||||| ||||| ||||||||| || |||| || ||||| ||||||||||| |||||||||||    
T  15697353 ccaaaatctgatattttcggattcatttcatcatccagaagaacattgctggctttcagatctctatg 15697420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 15799843 - 15799924
Alignment:
Q  124 caaatattctagccataccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctct 205  Q
    ||||| |||| ||||  ||||||||||| ||||| ||||||||| || |||| || ||||| ||||||||||| ||||||||    
T  15799843 caaatgttcttgccaatccaaaatctgatatttttggattcatttcatcatccagaagaacattgctggctttcagatctct 15799924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 15692677 - 15692749
Alignment:
Q  141 ccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctctatgaatta 213  Q
    ||||||||||| ||||||||||||||| ||  ||| |  ||||| ||||| ||||| ||||||||||||||||    
T  15692677 ccaaaatctgatattttgggattcatttcatgatctaatagaacattgctagctttgagatctctatgaatta 15692749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 15703715 - 15703799
Alignment:
Q  124 caaatattctagccataccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctctatg 208  Q
    ||||| |||| ||||  ||||||||||| ||||| ||||||||| || |||| || |||||||||| |||||| || ||||||||    
T  15703715 caaattttcttgccaatccaaaatctgatatttttggattcatttcatcatctagaagaacgttgcaggctttaaggtctctatg 15703799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 15722546 - 15722626
Alignment:
Q  124 caaatattctagccataccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctc 204  Q
    ||||| |||| |||| |||||||||||| ||||| ||||||||| ||   || || ||||||||||||||||| |||||||    
T  15722546 caaattttcttgccaaaccaaaatctgatatttttggattcatttcactgtccagaagaacgttgctggctttcagatctc 15722626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 15805392 - 15805456
Alignment:
Q  141 ccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctct 205  Q
    ||||||||||| ||||| ||||||||| || |||| || ||||| ||||||||||| ||||||||    
T  15805392 ccaaaatctgatatttttggattcatttcatcatctagaagaacattgctggctttcagatctct 15805456  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 23560564 - 23560634
Alignment:
Q  201 tctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataat 271  Q
    ||||||||||||||  |||| || ||||||||||||||||| | || |||||| ||||| || ||||||||    
T  23560564 tctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggcaattccgcaaataat 23560634  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 13855267 - 13855176
Alignment:
Q  75 tactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcat 166  Q
    |||||||| ||||| | ||| ||||||||  | | ||||| |||  ||||| | ||||||||||||||||||||||| ||||||||||||||    
T  13855267 tactatgtaccgactattctgtttgttctcccctcaatttgatcacctccacacattctagccataccaaaatctgaaattttgggattcat 13855176  T

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Target: scaffold0090 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 8284 - 8321
Alignment:
Q  129 attctagccataccaaaatctgagattttgggattcat 166  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  8284 attctagccatgccaaaatctgaaattttgggattcat 8321  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 47607412 - 47607375
Alignment:
Q  129 attctagccataccaaaatctgagattttgggattcat 166  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  47607412 attctagccatgccaaaatctgagattttaggattcat 47607375  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 47287703 - 47287663
Alignment:
Q  123 ccaaatattctagccataccaaaatctgagattttgggatt 163  Q
    ||||||||||| ||||| ||||||||||| |||||||||||    
T  47287703 ccaaatattcttgccatcccaaaatctgaaattttgggatt 47287663  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 20168090 - 20168134
Alignment:
Q  121 ctccaaatattctagccataccaaaatctgagattttgggattca 165  Q
    ||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  20168090 ctccaaagattctagccataccaaattctgatatttttggattca 20168134  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 20231601 - 20231557
Alignment:
Q  121 ctccaaatattctagccataccaaaatctgagattttgggattca 165  Q
    ||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  20231601 ctccaaagattctagccataccaaagtctgatatttttggattca 20231557  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 20243666 - 20243622
Alignment:
Q  121 ctccaaatattctagccataccaaaatctgagattttgggattca 165  Q
    |||||||||||||||||| |||||| ||||| ||||| |||||||    
T  20243666 ctccaaatattctagccagaccaaagtctgatatttttggattca 20243622  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 20264060 - 20264016
Alignment:
Q  121 ctccaaatattctagccataccaaaatctgagattttgggattca 165  Q
    ||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  20264060 ctccaaagattctagccataccaaagtctgatatttttggattca 20264016  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 20279569 - 20279525
Alignment:
Q  121 ctccaaatattctagccataccaaaatctgagattttgggattca 165  Q
    ||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  20279569 ctccaaagattctagccataccaaagtctgatatttttggattca 20279525  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 20289302 - 20289266
Alignment:
Q  129 attctagccataccaaaatctgagattttgggattca 165  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  20289302 attctagccataccaaagtctgatattttgggattca 20289266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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