View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17983_low_7 (Length: 319)
Name: NF17983_low_7
Description: NF17983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17983_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 138 - 307
Target Start/End: Original strand, 38441700 - 38441869
Alignment:
| Q |
138 |
aaagtccgatttgatccttttaaatcaccaatttggtcccttgatttgtgtaatttattgtagattcgtccattcacttatgaaaacatgtcatcacatt |
237 |
Q |
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| T |
38441700 |
aaagtccagtttgatcattttaaatcaccaatttggtcccttgatttgtgtaatttattgtagattcgtccattcacttatgaaaacatgccatcatatt |
38441799 |
T |
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| Q |
238 |
taatcattaaagaacaaagttgcattaacttacataaattaagagaccaaagtgatatttaacttatatt |
307 |
Q |
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| T |
38441800 |
taatcattaaagaacaaagttgcattaacttatataaattaagagaccaaagtggtatttaacttatatt |
38441869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 38441549 - 38441661
Alignment:
| Q |
6 |
ttctttgattccacgtgtgaactataaaacttaaagtttacaatggttaaacattatttaaccatatttttaggcttaaataccactaaccattttagtc |
105 |
Q |
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| T |
38441549 |
ttctttgattccacatgtgaactataaaccttaaagtttacaatggttaaacatgatttaaccatatttttaggcttaaataccactaaccattttagtc |
38441648 |
T |
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| Q |
106 |
ctttaacttattt |
118 |
Q |
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| T |
38441649 |
ctttaatttattt |
38441661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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